PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013599767.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 1005aa MW: 111420 Da PI: 6.5365

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013599767.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.8	5.2e-29	630	680	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF +++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rkik++ XP_013599767.1 630 EKTISLDVLQQYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKV 680 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55781	1.67E-5	253	324	IPR029016	GAF domain-like
PROSITE profile	PS51519	17.393	619	700	IPR003035	RWP-RK domain
Pfam	PF02042	7.7E-26	632	680	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.6E-23	905	993	No hit	No description
Pfam	PF00564	6.9E-20	909	990	IPR000270	PB1 domain
PROSITE profile	PS51745	27.384	909	991	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.3E-27	909	991	No hit	No description
SMART	SM00666	2.8E-28	909	991	IPR000270	PB1 domain
CDD	cd06407	6.09E-34	910	990	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1005 aa Download sequence Send to blast
MESHSADLTF RPSLSLSNSN PKPKKRTRRR KLSRENSRKE NRWKMCEPDD NTARNGATPP 60 PSRSRELLMD VDDLDLDGSW PLDQIPYLSS SNRMISPLFV SSSSEQPCSP LWAFSDVGRA 120 VNHRGDDEKI SSASGVPSFR LADYPLFLPY SSSPSVAENT TEKHNGFQFP SPLMSLVPPE 180 NTDNYCVIKE RMTQALRYFK ESTEQHVLAQ VWAPVRKNGR DLLTTLGQPF VLNPNGNGLN 240 QYRMISLTYM FSVDSESDIE LGLPGRVFRQ KLPEWTPNVQ YYSSKEFSRL DHALHYNVRG 300 TLALPVFNPS GDSCIGVVEL IMTSEKIHYA PEVDRVCKAL EAVNLKSSEI LDHQTTQICN 360 ESRQNALAEI LEVLTVVCET HNLPLAQTWV PCQHGSVLAN GGGLKKNCTS FDGSCMGQVC 420 MSTTDMACYV VDAHVWGFRD ACLEHHLQKG QGVAGRAFLN GGSCFCRDIT KFCKTQYPLV 480 HYALMFKLTT CFAISLQSSY TGDDSYILEF FLPSSIKDNQ VQDLLLGSLL VTMKEHFQSL 540 RVASGVDFGE DDDKLSFEII QALPDENIHS EIESIRVPFS GFKSNATESL LIPQPAVQSS 600 APVNGKTNVA TVNGVVKEKK KTEKKRGKTE KTISLDVLQQ YFTGSLKDAA KSLGVCPTTM 660 KRICRQHGIS RWPSRKIKKV NRSITKLKRV IESVQCTDGG LGLTSMAVSS IPWTHGQTAA 720 HPLNSPSGSK PPELPTTNNS PNHWSSDHHS PPEPNGSPEL PSNGHKRSRT GDESAGTPTS 780 HGSCDGNQLD ETKVPNQDPL FTVGGPPGLF FPPYSRDHDV STASFSMQNR PLGTIDHFRG 840 MPIEDAGSSK DLRNLCSTAA FDDKFPDSNW MNNDNNSNNN NNNNMYVPPK EEEVVNITRE 900 LPSGSEMRTV TIKASYKEDI IRFRISSGSG IMELKDEVAK RLRLDAGTFD IKYLDDDNEW 960 VLIACDADLQ ECLEIPRSSR TNVVRLLVHD VTANLGSSCE STGEL

Sequence ? help Back to Top

Protein Sequence Length: 1005 aa Download sequence Send to blast

MESHSADLTF RPSLSLSNSN PKPKKRTRRR KLSRENSRKE NRWKMCEPDD NTARNGATPP  60
PSRSRELLMD VDDLDLDGSW PLDQIPYLSS SNRMISPLFV SSSSEQPCSP LWAFSDVGRA  120
VNHRGDDEKI SSASGVPSFR LADYPLFLPY SSSPSVAENT TEKHNGFQFP SPLMSLVPPE  180
NTDNYCVIKE RMTQALRYFK ESTEQHVLAQ VWAPVRKNGR DLLTTLGQPF VLNPNGNGLN  240
QYRMISLTYM FSVDSESDIE LGLPGRVFRQ KLPEWTPNVQ YYSSKEFSRL DHALHYNVRG  300
TLALPVFNPS GDSCIGVVEL IMTSEKIHYA PEVDRVCKAL EAVNLKSSEI LDHQTTQICN  360
ESRQNALAEI LEVLTVVCET HNLPLAQTWV PCQHGSVLAN GGGLKKNCTS FDGSCMGQVC  420
MSTTDMACYV VDAHVWGFRD ACLEHHLQKG QGVAGRAFLN GGSCFCRDIT KFCKTQYPLV  480
HYALMFKLTT CFAISLQSSY TGDDSYILEF FLPSSIKDNQ VQDLLLGSLL VTMKEHFQSL  540
RVASGVDFGE DDDKLSFEII QALPDENIHS EIESIRVPFS GFKSNATESL LIPQPAVQSS  600
APVNGKTNVA TVNGVVKEKK KTEKKRGKTE KTISLDVLQQ YFTGSLKDAA KSLGVCPTTM  660
KRICRQHGIS RWPSRKIKKV NRSITKLKRV IESVQCTDGG LGLTSMAVSS IPWTHGQTAA  720
HPLNSPSGSK PPELPTTNNS PNHWSSDHHS PPEPNGSPEL PSNGHKRSRT GDESAGTPTS  780
HGSCDGNQLD ETKVPNQDPL FTVGGPPGLF FPPYSRDHDV STASFSMQNR PLGTIDHFRG  840
MPIEDAGSSK DLRNLCSTAA FDDKFPDSNW MNNDNNSNNN NNNNMYVPPK EEEVVNITRE  900
LPSGSEMRTV TIKASYKEDI IRFRISSGSG IMELKDEVAK RLRLDAGTFD IKYLDDDNEW  960
VLIACDADLQ ECLEIPRSSR TNVVRLLVHD VTANLGSSCE STGEL

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. Detected in root hairs, emerging secondary roots, vascular tissues, leaf parenchyma cells and stomata. {ECO:0000269\|PubMed:18826430}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013599767.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK228452	0.0	AK228452.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL15-03-P13.
GenBank	BT005776	0.0	BT005776.1 Arabidopsis thaliana clone RAFL15-03-P13 (R20174) unknown protein (At4g24020) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013599767.1	0.0	PREDICTED: protein NLP7
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A0D3A5T4	0.0	A0A0D3A5T4_BRAOL; Uncharacterized protein
STRING	Bo1g037430.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2507	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]