PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013599470.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 391aa MW: 43268.8 Da PI: 6.5971

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013599470.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.8	6.5e-10	196	252	5	61
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l l+ l XP_013599470.1 196 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLSV 252 9*******************************************9999877666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.5E-15	192	256	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.749	194	257	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.6E-11	196	250	No hit	No description
Pfam	PF00170	9.4E-9	196	248	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.44E-11	196	247	No hit	No description
CDD	cd14703	4.38E-23	197	246	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MGKEKSPSGG LPPPSPSPSG RYSPNGSSFA MKPESSFPPL TPSGSSSDAN RFSHDISRMS 60 DNPPKTLGHR RAHSEILTLP DDLSFDSDLG VVGAAADGPS FSDDTDEDLL SMYLDMDKFN 120 SSEASSSLVG EPSEPSWRNE LGSTSSERPR IRHQHSQSMD GTTSIKPELL MSGSNEDAKK 180 RLSAAKLSEL ALIDPKRAKR IWANRQSAAR SKERKMRYIA ELERKVQTLQ TEATSLSAQL 240 TLLQRDTNGL SVENNELKLR VQSMEQQVHL QDTLNEALKE EVQHLKVLTG QGVSNGTSMM 300 NYGSFGSNQQ FYPSNQSRHT MLAAQQFQQL QIQSQKQQQL HQQQMYQLQQ QQHIQQHEQQ 360 SGATELRRPM SSSGQKESSA SPDPEATLTK D

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MGKEKSPSGG LPPPSPSPSG RYSPNGSSFA MKPESSFPPL TPSGSSSDAN RFSHDISRMS  60
DNPPKTLGHR RAHSEILTLP DDLSFDSDLG VVGAAADGPS FSDDTDEDLL SMYLDMDKFN  120
SSEASSSLVG EPSEPSWRNE LGSTSSERPR IRHQHSQSMD GTTSIKPELL MSGSNEDAKK  180
RLSAAKLSEL ALIDPKRAKR IWANRQSAAR SKERKMRYIA ELERKVQTLQ TEATSLSAQL  240
TLLQRDTNGL SVENNELKLR VQSMEQQVHL QDTLNEALKE EVQHLKVLTG QGVSNGTSMM  300
NYGSFGSNQQ FYPSNQSRHT MLAAQQFQQL QIQSQKQQQL HQQQMYQLQQ QQHIQQHEQQ  360
SGATELRRPM SSSGQKESSA SPDPEATLTK D

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed constitutively at a low level in young seedlings and in roots, stems and leaves of mature plants.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013599470.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013599470.1	0.0	PREDICTED: probable transcription factor PosF21
Swissprot	Q04088	1e-166	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	A0A0D3DJ39	0.0	A0A0D3DJ39_BRAOL; Uncharacterized protein
STRING	Bo8g005940.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2445	27	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	0.0	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]