PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013599446.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

ZF-HD

Protein Properties

Length: 343aa MW: 37206 Da PI: 8.4253

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013599446.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	110.9	6.7e-35	49	106	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 +v+YkeClkNhAa++Ggha+DGCgEfmps++++ +++++lkCaACgCHRnFHRr++++ XP_013599446.1 49 TVTYKECLKNHAAAIGGHALDGCGEFMPSPSSTpSDPTSLKCAACGCHRNFHRRDPDD 106 799***************************99******************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	6.4E-29	50	104	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	3.3E-31	51	103	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	8.0E-18	52	106	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.717	52	103	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.47E-17	189	261	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.6E-28	192	262	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.6E-25	202	259	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MLEVGTMDMT PKSPEPESET PTRIQPAKPI SFSNGIIKRH HHIHHRTVTV TYKECLKNHA 60 AAIGGHALDG CGEFMPSPSS TPSDPTSLKC AACGCHRNFH RRDPDDSSLT SAVPPPSLPP 120 SSTTAAIEYQ PHHRHHPPPP APPLPRSPTS SSPPPISSSY MLLALSGNNK PGGNSLPFSD 180 LNFAANNLST HHHHNHHTPG SRKRFRTKFS QTQKDKMHEF ADRIGWKIQK RDEDEVRDFC 240 REVGVDKGVL KVWMHNNKNT FNTRRDQPFS GDTTVQKIDN GVAVSGGENI NNNNNNNNNN 300 NNNAVDVGVH GGNGLKHDLH GGDGGRFESD SGGAAANGSS STS

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MLEVGTMDMT PKSPEPESET PTRIQPAKPI SFSNGIIKRH HHIHHRTVTV TYKECLKNHA  60
AAIGGHALDG CGEFMPSPSS TPSDPTSLKC AACGCHRNFH RRDPDDSSLT SAVPPPSLPP  120
SSTTAAIEYQ PHHRHHPPPP APPLPRSPTS SSPPPISSSY MLLALSGNNK PGGNSLPFSD  180
LNFAANNLST HHHHNHHTPG SRKRFRTKFS QTQKDKMHEF ADRIGWKIQK RDEDEVRDFC  240
REVGVDKGVL KVWMHNNKNT FNTRRDQPFS GDTTVQKIDN GVAVSGGENI NNNNNNNNNN  300
NNNAVDVGVH GGNGLKHDLH GGDGGRFESD SGGAAANGSS STS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	4e-20	201	260	16	75	ZF-HD homeobox family protein
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in flowers, stems and inflorescence and, to a lower extent, in leaves and stems. {ECO:0000269\|PubMed:16428600}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00387	DAP	Transfer from AT3G28920	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013599446.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189594	0.0	AC189594.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH013N10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013599446.1	0.0	PREDICTED: zinc-finger homeodomain protein 9
Swissprot	Q9LHF0	1e-125	ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBL	A0A0D3DBF5	0.0	A0A0D3DBF5_BRAOL; Uncharacterized protein
STRING	Bo7g087100.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2220	25	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28920.1	1e-91	homeobox protein 34

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]