PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013599276.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 239aa MW: 26683.8 Da PI: 7.4234 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.4 | 9.7e-19 | 167 | 201 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l XP_013599276.1 167 CSHCGVQKTPQWRMGPLGAKTLCNACGVRFKSGRL 201 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 1.2E-86 | 2 | 239 | IPR016679 | Transcription factor, GATA, plant |
PROSITE profile | PS50114 | 11.464 | 161 | 197 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.38E-13 | 161 | 223 | No hit | No description |
SMART | SM00401 | 2.7E-13 | 161 | 215 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 5.9E-14 | 165 | 199 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 5.04E-15 | 167 | 223 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 167 | 192 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.5E-16 | 167 | 201 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 239 aa Download sequence Send to blast |
MEYVEAFLSD FSVDDLLDLS NTDAFVREKS SSSPREEERE KANSSSDQIT LLSPLDDILS 60 LPGSGPKLNA PVGDLEDLEW LSNFVDDSFS DYHDFPVNPV ASVEVQRQYV PVKPRSKRRR 120 TNGHLWSLES PYSSLYTAVS TEKKKRGRPK AETSSGDGVQ QQTRRCCSHC GVQKTPQWRM 180 GPLGAKTLCN ACGVRFKSGR LLPEYRPACS PTFSTEIHSN SHRKVLELRL TKTADQGQG |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013599276.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC189373 | 1e-150 | AC189373.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB048F07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013599276.1 | 1e-178 | PREDICTED: GATA transcription factor 7 | ||||
Swissprot | O65515 | 1e-117 | GATA7_ARATH; GATA transcription factor 7 | ||||
TrEMBL | A0A0D3A1J9 | 1e-177 | A0A0D3A1J9_BRAOL; GATA transcription factor | ||||
STRING | Bo1g005750.1 | 1e-177 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14654 | 17 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G36240.1 | 6e-96 | GATA transcription factor 7 |
Publications ? help Back to Top | |||
---|---|---|---|
|