PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013599251.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 903aa MW: 100725 Da PI: 7.2727

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013599251.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91	9e-29	605	655	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i le+l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ XP_013599251.1 605 EKTIGLEVLRQYFAGSLKDAAKNIGVCPTTLKRICRQHGITRWPSRKIKKV 655 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.041	594	675	IPR003035	RWP-RK domain
Pfam	PF02042	1.8E-24	608	655	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.01E-23	792	887	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.3E-23	798	884	No hit	No description
SMART	SM00666	2.4E-27	800	885	IPR000270	PB1 domain
PROSITE profile	PS51745	28.53	800	885	IPR000270	PB1 domain
CDD	cd06407	3.98E-39	802	884	No hit	No description
Pfam	PF00564	2.6E-19	802	884	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 903 aa Download sequence Send to blast
MEGGSSGGHG SFLPNSSFGA FSETATNMDF MDELFFDGCW LETTDGKSLK QTTPTNMNDN 60 NNNNNNSFLY ETERKFPQIT PGSLKIEDLT NRPMNQVPSY QFTAMSSTQA DKSLLEETER 120 GKRWWIAPRT RQGPSSSVKE RLVQAIKGLN EAVQDKDSLI QIWVPIQQEG KNFLTTLEQP 180 HSFNPKHLSL KRYRDASVAY NFLADEDSKE SVGLPGRVFL GKLPEWTPDV RFFRSEEYPR 240 IKEAQKCDVR GSLALPVFER GSGICLGVVE IVRTTQKMNY KPELDNICKA LEAVNLRSSE 300 NLKSPSSEFL QVYNQFYHAA LPEVSNFLAS VCRSYDLPLA LTWAPCARQE GRGGSRHSDE 360 NFSECVSTVD SACFVLDQQS YHVQVACSEH HLLQGEGIVG KAFKRTKLFF VPEVTTFSKT 420 NYSLAHHAKI SGLHAALAVP LKNKFNGSVE FVLEFFFPKT CLDTEAQQEM LKSLSVTLQN 480 DFRSLNLVID KELELEVVFP VREELLFSEK PLPLEPLSLE EISQEDSSWI SHMIKANEKG 540 KGVSLSWEYQ KEEPKEEFML TSGWDNNNQI CLGRGHSSFD SASFGVGQPL LGSRRQGEKR 600 RTKTEKTIGL EVLRQYFAGS LKDAAKNIGV CPTTLKRICR QHGITRWPSR KIKKVGHSLK 660 KLQLVIDSVQ GVQGSIQLDS FYTSFPELSS QNVTGTGTGT GTYFKNAQTE NGVSAQGIAS 720 KSPPSSSCSH SSGSSTCCST EANNTANTLT TLMAENAGEI LKRARSEVKL HTMEETKPIS 780 RTLSHKTFSQ HPLSSKAGGA SKVKATFGEA KVRFTLLPTW GFRELRHEIA SRFNIDNNNI 840 ETFDLKYLDD DKEWVLLTCE ADLEECIDIY RSSQSRTIKI SVHQASQVKL RGSFGSTGPG 900 PSL

Sequence ? help Back to Top

Protein Sequence Length: 903 aa Download sequence Send to blast

MEGGSSGGHG SFLPNSSFGA FSETATNMDF MDELFFDGCW LETTDGKSLK QTTPTNMNDN  60
NNNNNNSFLY ETERKFPQIT PGSLKIEDLT NRPMNQVPSY QFTAMSSTQA DKSLLEETER  120
GKRWWIAPRT RQGPSSSVKE RLVQAIKGLN EAVQDKDSLI QIWVPIQQEG KNFLTTLEQP  180
HSFNPKHLSL KRYRDASVAY NFLADEDSKE SVGLPGRVFL GKLPEWTPDV RFFRSEEYPR  240
IKEAQKCDVR GSLALPVFER GSGICLGVVE IVRTTQKMNY KPELDNICKA LEAVNLRSSE  300
NLKSPSSEFL QVYNQFYHAA LPEVSNFLAS VCRSYDLPLA LTWAPCARQE GRGGSRHSDE  360
NFSECVSTVD SACFVLDQQS YHVQVACSEH HLLQGEGIVG KAFKRTKLFF VPEVTTFSKT  420
NYSLAHHAKI SGLHAALAVP LKNKFNGSVE FVLEFFFPKT CLDTEAQQEM LKSLSVTLQN  480
DFRSLNLVID KELELEVVFP VREELLFSEK PLPLEPLSLE EISQEDSSWI SHMIKANEKG  540
KGVSLSWEYQ KEEPKEEFML TSGWDNNNQI CLGRGHSSFD SASFGVGQPL LGSRRQGEKR  600
RTKTEKTIGL EVLRQYFAGS LKDAAKNIGV CPTTLKRICR QHGITRWPSR KIKKVGHSLK  660
KLQLVIDSVQ GVQGSIQLDS FYTSFPELSS QNVTGTGTGT GTYFKNAQTE NGVSAQGIAS  720
KSPPSSSCSH SSGSSTCCST EANNTANTLT TLMAENAGEI LKRARSEVKL HTMEETKPIS  780
RTLSHKTFSQ HPLSSKAGGA SKVKATFGEA KVRFTLLPTW GFRELRHEIA SRFNIDNNNI  840
ETFDLKYLDD DKEWVLLTCE ADLEECIDIY RSSQSRTIKI SVHQASQVKL RGSFGSTGPG  900
PSL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013599251.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189656	0.0	AC189656.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS015K01, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013599251.1	0.0	PREDICTED: protein NLP2-like isoform X1
Refseq	XP_013599252.1	0.0	PREDICTED: protein NLP2-like isoform X1
Refseq	XP_013599254.1	0.0	PREDICTED: protein NLP2-like isoform X1
Swissprot	Q7X9B9	0.0	NLP2_ARATH; Protein NLP2
TrEMBL	A0A0D3DHT2	0.0	A0A0D3DHT2_BRAOL; Uncharacterized protein
STRING	Bo7g117300.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1998	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein