PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013599199.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 610aa    MW: 69661.3 Da    PI: 7.5797
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013599199.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.13.4e-1699180286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr..tsessstcpyfdqle 86 
                     W+ +evlaL+++r+ +e+++ +       We+ s+k++e gf+rsp++Ckek+e+ ++ry + +++ + +  ++ ++ ++++f++++
  XP_013599199.1  99 WCSDEVLALLRFRSTVENWFPEF-----TWEHTSRKLAEVGFKRSPQECKEKFEEEERRYFNSNNNTNAHhmSNYNKGNYRLFSEVD 180
                     ********************998.....9*****************************99999888777734466666788887765 PP
2trihelix99.33.3e-31447547186
        trihelix   1 rWtkqevlaLiearremeerlrrgk................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 
                     rW+++evlaLi++rr+m +   +                  ++ plWe++skkm e g++rs+k+Ckekwen+nk+++k+k+ +kkr +  s+tc
  XP_013599199.1 447 RWPRDEVLALINIRRSMSSMNDDHHrkddiplsssspspstKAVPLWERISKKMLEVGYKRSAKRCKEKWENINKYFRKTKDVNKKR-PLGSRTC 540
                     8**************7765555432344666677777777799*******************************************8.9****** PP

        trihelix  80 pyfdqle 86 
                     pyf+ql+
  XP_013599199.1 541 PYFHQLT 547
                     *****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.2E-1197163No hitNo description
PROSITE profilePS500905.48298150IPR017877Myb-like domain
PfamPF138373.9E-19446548No hitNo description
CDDcd122037.38E-25446527No hitNo description
PROSITE profilePS500906.748447520IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MFDGGVPEQI HRFIASPQPP PPLPPHQPAA ERSLPFPVSF ASFNTNHQAH MLNLDGPKII  60
HHHHHHHHHD IKDSGATSEW MGHTDHDGDN HSHHHHHPWC SDEVLALLRF RSTVENWFPE  120
FTWEHTSRKL AEVGFKRSPQ ECKEKFEEEE RRYFNSNNNT NAHHMSNYNK GNYRLFSEVD  180
EFYHHGHAGG EHVVSSEVGD NQNKRNSSLD GKGNVEETGQ DLLEDKTDHQ DQGQVDESSM  240
RDKMNSIDNV GKVGNVEEDA KSSSSASLMM IMRDNKKRKR KKKKERYGVL KGFCEGLVSN  300
VIAQQEEMHK KLLEDMVKKE EEKISREEVW KKQEMERLNK ELEIRAQEQA MASDRNTSII  360
KFISKFTDHN NHDDGNNKVQ SPNPSQDSSS LVLSKPQRSR KCQTSSSLQT LTPQNPSLEP  420
TSPKTLKTKT KNPKPPKGDG QGDIGKRWPR DEVLALINIR RSMSSMNDDH HRKDDIPLSS  480
SSPSPSTKAV PLWERISKKM LEVGYKRSAK RCKEKWENIN KYFRKTKDVN KKRPLGSRTC  540
PYFHQLTALY SQPSTGTTTT VTADTSVEEL ETRPEENRVG SGDSDIPTAM HVDGASEKSN  600
EQFSGFDLAF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275280KKRKRK
2275282KKRKRKKK
3275283KKRKRKKKK
4276284KRKRKKKKE
5277281RKRKK
6277283RKRKKKK
7277284RKRKKKKE
8279284RKKKKE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013599199.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013599199.10.0PREDICTED: trihelix transcription factor GTL2-like
SwissprotQ8H1810.0GTL2_ARATH; Trihelix transcription factor GTL2
TrEMBLA0A0D3DCC30.0A0A0D3DCC3_BRAOL; Uncharacterized protein
STRINGBo7g093250.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82682838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.10.0Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]