PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013598999.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TALE | ||||||||
Protein Properties | Length: 526aa MW: 58879.5 Da PI: 6.0084 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.2 | 1.4e-08 | 331 | 368 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gL+ qV++WF N R + XP_013598999.1 331 FEHflHPYPKDSDKIMLARQTGLSRGQVSNWFINARVR 368 664459******************************88 PP | |||||||
2 | BELL | 127.5 | 4.9e-41 | 198 | 269 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqel++k +kLls+l+eVd+rYkqy++q+q+v+ssF+++ag+g+akpYt+lAl++iSrhFr+L+dai+eqi XP_013598999.1 198 ERQELHNKLTKLLSMLDEVDRRYKQYYQQMQIVVSSFDVIAGYGAAKPYTALALQTISRHFRSLRDAISEQI 269 79*********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 6.1E-72 | 133 | 267 | IPR006563 | POX domain |
Pfam | PF07526 | 3.8E-49 | 139 | 266 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.758 | 309 | 372 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-8 | 312 | 376 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.32E-11 | 312 | 373 | No hit | No description |
SuperFamily | SSF46689 | 1.54E-16 | 313 | 378 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-26 | 315 | 377 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.0E-17 | 329 | 368 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 526 aa Download sequence Send to blast |
MENYQEARFL PGNAMMNTTV SYSEEAAGRK RTEASNVSAS HETQVYSRFG GVSQMQDIQD 60 FGSWRDQASD RSGFQLVNAM AGPTRVHQTG QGLSLSLGSQ ILPGIHQGMS PRPEHCRGNE 120 YATQSFPVGN PNMDVVRTIP NSKYLKAAQE LLDEAVNVKK SLNQFQPEGD KNKENPQEPD 180 QNPQDSNKNP PAEISQSERQ ELHNKLTKLL SMLDEVDRRY KQYYQQMQIV VSSFDVIAGY 240 GAAKPYTALA LQTISRHFRS LRDAISEQIV VTRKCLGEQD GSDGKGVGTI SRLKYVDQHL 300 RQQRGFMQPQ AWRPQRGLPE NSVLILRAWL FEHFLHPYPK DSDKIMLARQ TGLSRGQVSN 360 WFINARVRLW KPMVEEIYKE EFTENDSNSS SESTPKMSEV RPVVADDEDR AQELPQDHGH 420 EYGVETCGMV QGGHQMDGGR FITIEPTYHV AEISRFGGGG GVSLTLGLQN SQGHDNVVAM 480 SSEAYNSFPG VDIYGNDIPG AEMEYVNPGS RQNRINSSQM VHDFVA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 1e-14 | 318 | 376 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 1e-14 | 318 | 376 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013598999.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013598997.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 6 isoform X2 | ||||
Refseq | XP_013598998.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 6 isoform X2 | ||||
Refseq | XP_013598999.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 6 isoform X2 | ||||
Refseq | XP_022562670.1 | 0.0 | BEL1-like homeodomain protein 6 | ||||
Refseq | XP_022562671.1 | 0.0 | BEL1-like homeodomain protein 6 | ||||
Swissprot | O65685 | 0.0 | BLH6_ARATH; BEL1-like homeodomain protein 6 | ||||
TrEMBL | A0A0D3DHP8 | 0.0 | A0A0D3DHP8_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g116960.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34610.2 | 0.0 | BEL1-like homeodomain 6 |
Publications ? help Back to Top | |||
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