PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013598999.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 526aa    MW: 58879.5 Da    PI: 6.0084
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013598999.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.21.4e-083313681954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+ +++  LA+++gL+  qV++WF N R +
  XP_013598999.1 331 FEHflHPYPKDSDKIMLARQTGLSRGQVSNWFINARVR 368
                     664459******************************88 PP

2BELL127.54.9e-41198269172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     erqel++k +kLls+l+eVd+rYkqy++q+q+v+ssF+++ag+g+akpYt+lAl++iSrhFr+L+dai+eqi
  XP_013598999.1 198 ERQELHNKLTKLLSMLDEVDRRYKQYYQQMQIVVSSFDVIAGYGAAKPYTALALQTISRHFRSLRDAISEQI 269
                     79*********************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.1E-72133267IPR006563POX domain
PfamPF075263.8E-49139266IPR006563POX domain
PROSITE profilePS5007111.758309372IPR001356Homeobox domain
SMARTSM003891.0E-8312376IPR001356Homeobox domain
CDDcd000862.32E-11312373No hitNo description
SuperFamilySSF466891.54E-16313378IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-26315377IPR009057Homeodomain-like
PfamPF059201.0E-17329368IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MENYQEARFL PGNAMMNTTV SYSEEAAGRK RTEASNVSAS HETQVYSRFG GVSQMQDIQD  60
FGSWRDQASD RSGFQLVNAM AGPTRVHQTG QGLSLSLGSQ ILPGIHQGMS PRPEHCRGNE  120
YATQSFPVGN PNMDVVRTIP NSKYLKAAQE LLDEAVNVKK SLNQFQPEGD KNKENPQEPD  180
QNPQDSNKNP PAEISQSERQ ELHNKLTKLL SMLDEVDRRY KQYYQQMQIV VSSFDVIAGY  240
GAAKPYTALA LQTISRHFRS LRDAISEQIV VTRKCLGEQD GSDGKGVGTI SRLKYVDQHL  300
RQQRGFMQPQ AWRPQRGLPE NSVLILRAWL FEHFLHPYPK DSDKIMLARQ TGLSRGQVSN  360
WFINARVRLW KPMVEEIYKE EFTENDSNSS SESTPKMSEV RPVVADDEDR AQELPQDHGH  420
EYGVETCGMV QGGHQMDGGR FITIEPTYHV AEISRFGGGG GVSLTLGLQN SQGHDNVVAM  480
SSEAYNSFPG VDIYGNDIPG AEMEYVNPGS RQNRINSSQM VHDFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-14318376563Homeobox protein Meis2
3k2a_B1e-14318376563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013598999.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013598997.10.0PREDICTED: BEL1-like homeodomain protein 6 isoform X2
RefseqXP_013598998.10.0PREDICTED: BEL1-like homeodomain protein 6 isoform X2
RefseqXP_013598999.10.0PREDICTED: BEL1-like homeodomain protein 6 isoform X2
RefseqXP_022562670.10.0BEL1-like homeodomain protein 6
RefseqXP_022562671.10.0BEL1-like homeodomain protein 6
SwissprotO656850.0BLH6_ARATH; BEL1-like homeodomain protein 6
TrEMBLA0A0D3DHP80.0A0A0D3DHP8_BRAOL; Uncharacterized protein
STRINGBo7g116960.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.20.0BEL1-like homeodomain 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]