PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013598996.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 546aa    MW: 61186.1 Da    PI: 6.0978
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013598996.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.11.4e-083513881954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+ +++  LA+++gL+  qV++WF N R +
  XP_013598996.1 351 FEHflHPYPKDSDKIMLARQTGLSRGQVSNWFINARVR 388
                     664459******************************88 PP

2BELL127.45.2e-41218289172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     erqel++k +kLls+l+eVd+rYkqy++q+q+v+ssF+++ag+g+akpYt+lAl++iSrhFr+L+dai+eqi
  XP_013598996.1 218 ERQELHNKLTKLLSMLDEVDRRYKQYYQQMQIVVSSFDVIAGYGAAKPYTALALQTISRHFRSLRDAISEQI 289
                     79*********************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.1E-72153287IPR006563POX domain
PfamPF075264.1E-49159286IPR006563POX domain
PROSITE profilePS5007111.758329392IPR001356Homeobox domain
CDDcd000862.19E-11332393No hitNo description
SMARTSM003891.0E-8332396IPR001356Homeobox domain
SuperFamilySSF466891.63E-16333398IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-26335397IPR009057Homeodomain-like
PfamPF059201.1E-17349388IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MDKGLWNSTD PRSTLHCYIS MENYQEARFL PGNAMMNTTV SYSEEAAGRK RTEASNVSAS  60
HETQVYSRFG GVSQMQDIQD FGSWRDQASD RSGFQLVNAM AGPTRVHQTG QGLSLSLGSQ  120
ILPGIHQGMS PRPEHCRGNE YATQSFPVGN PNMDVVRTIP NSKYLKAAQE LLDEAVNVKK  180
SLNQFQPEGD KNKENPQEPD QNPQDSNKNP PAEISQSERQ ELHNKLTKLL SMLDEVDRRY  240
KQYYQQMQIV VSSFDVIAGY GAAKPYTALA LQTISRHFRS LRDAISEQIV VTRKCLGEQD  300
GSDGKGVGTI SRLKYVDQHL RQQRGFMQPQ AWRPQRGLPE NSVLILRAWL FEHFLHPYPK  360
DSDKIMLARQ TGLSRGQVSN WFINARVRLW KPMVEEIYKE EFTENDSNSS SESTPKMSEV  420
RPVVADDEDR AQELPQDHGH EYGVETCGMV QGGHQMDGGR FITIEPTYHV AEISRFGGGG  480
GVSLTLGLQN SQGHDNVVAM SSEAYNSFPG VDIYGNDIPG AEMEYVNPGS RQNRINSSQM  540
VHDFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-14338396563Homeobox protein Meis2
3k2a_B1e-14338396563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013598996.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013598996.10.0PREDICTED: BEL1-like homeodomain protein 6 isoform X1
SwissprotO656850.0BLH6_ARATH; BEL1-like homeodomain protein 6
TrEMBLA0A3P6E9K00.0A0A3P6E9K0_BRAOL; Uncharacterized protein
STRINGBo7g116960.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28692563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.20.0BEL1-like homeodomain 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]