PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013598996.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TALE | ||||||||
Protein Properties | Length: 546aa MW: 61186.1 Da PI: 6.0978 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.1 | 1.4e-08 | 351 | 388 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gL+ qV++WF N R + XP_013598996.1 351 FEHflHPYPKDSDKIMLARQTGLSRGQVSNWFINARVR 388 664459******************************88 PP | |||||||
2 | BELL | 127.4 | 5.2e-41 | 218 | 289 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqel++k +kLls+l+eVd+rYkqy++q+q+v+ssF+++ag+g+akpYt+lAl++iSrhFr+L+dai+eqi XP_013598996.1 218 ERQELHNKLTKLLSMLDEVDRRYKQYYQQMQIVVSSFDVIAGYGAAKPYTALALQTISRHFRSLRDAISEQI 289 79*********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 6.1E-72 | 153 | 287 | IPR006563 | POX domain |
Pfam | PF07526 | 4.1E-49 | 159 | 286 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.758 | 329 | 392 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.19E-11 | 332 | 393 | No hit | No description |
SMART | SM00389 | 1.0E-8 | 332 | 396 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.63E-16 | 333 | 398 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-26 | 335 | 397 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.1E-17 | 349 | 388 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 546 aa Download sequence Send to blast |
MDKGLWNSTD PRSTLHCYIS MENYQEARFL PGNAMMNTTV SYSEEAAGRK RTEASNVSAS 60 HETQVYSRFG GVSQMQDIQD FGSWRDQASD RSGFQLVNAM AGPTRVHQTG QGLSLSLGSQ 120 ILPGIHQGMS PRPEHCRGNE YATQSFPVGN PNMDVVRTIP NSKYLKAAQE LLDEAVNVKK 180 SLNQFQPEGD KNKENPQEPD QNPQDSNKNP PAEISQSERQ ELHNKLTKLL SMLDEVDRRY 240 KQYYQQMQIV VSSFDVIAGY GAAKPYTALA LQTISRHFRS LRDAISEQIV VTRKCLGEQD 300 GSDGKGVGTI SRLKYVDQHL RQQRGFMQPQ AWRPQRGLPE NSVLILRAWL FEHFLHPYPK 360 DSDKIMLARQ TGLSRGQVSN WFINARVRLW KPMVEEIYKE EFTENDSNSS SESTPKMSEV 420 RPVVADDEDR AQELPQDHGH EYGVETCGMV QGGHQMDGGR FITIEPTYHV AEISRFGGGG 480 GVSLTLGLQN SQGHDNVVAM SSEAYNSFPG VDIYGNDIPG AEMEYVNPGS RQNRINSSQM 540 VHDFVA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 1e-14 | 338 | 396 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 1e-14 | 338 | 396 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013598996.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013598996.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 6 isoform X1 | ||||
Swissprot | O65685 | 0.0 | BLH6_ARATH; BEL1-like homeodomain protein 6 | ||||
TrEMBL | A0A3P6E9K0 | 0.0 | A0A3P6E9K0_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g116960.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2869 | 25 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34610.2 | 0.0 | BEL1-like homeodomain 6 |
Publications ? help Back to Top | |||
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