PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013598992.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CO-like
Protein Properties Length: 359aa    MW: 39586 Da    PI: 6.3396
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013598992.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.62.5e-084686439
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.....Htv 39
                     +C++++ ++++  C+d ++ lC++C   +H+g     H+ 
  XP_013598992.1 46 LICERCNAQPASVRCTDERVSLCQNCDWLGHNGatnshHKK 86
                    68*****************************9899997765 PP
2CCT56.59.9e-20302345144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R++a+ RYkeK+k RkF+K++rY sRK++A+ R RvKGrFvk+ 
  XP_013598992.1 302 RNNAVIRYKEKKKARKFDKRVRYVSRKERADVRRRVKGRFVKSG 345
                     999**************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501198.887147IPR000315B-box-type zinc finger
CDDcd000211.42E-6447No hitNo description
SMARTSM003364.4E-7447IPR000315B-box-type zinc finger
PROSITE profilePS501199.34389IPR000315B-box-type zinc finger
PfamPF006433.0E-54686IPR000315B-box-type zinc finger
CDDcd000213.27E-54776No hitNo description
SMARTSM003363.54888IPR000315B-box-type zinc finger
PROSITE profilePS5101714.951302344IPR010402CCT domain
PfamPF062039.8E-15302344IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005886Cellular Componentplasma membrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MGYMCDFCGE QRSMVHCRSD AACLCLSCDR NVHSANALSK RHSRTLICER CNAQPASVRC  60
TDERVSLCQN CDWLGHNGAT NSHHKKQTIN CYSGCPSSEE LASIWSFCLD LDLDFSKGGQ  120
SACEQGMGLM TIDEGTGEKR SGGHDANVDQ PGTSSAAQEK STLAKGLGVS EDDFCGNLIM  180
DEMDLAFEKY DELFGTAYNS SKDLFEHGGI ESLFEKHEGK TMQQPAESNA ASGDSFMTCR  240
TEPIICFTSQ PAHSNISFSG ATGEGNNAGD FQDCGVSSMQ QLSKETPLWC PPTAQEISAT  300
TRNNAVIRYK EKKKARKFDK RVRYVSRKER ADVRRRVKGR FVKSGEAYDY DPLSPTRSY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013598992.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013598992.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10
SwissprotQ9LUA90.0COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A0D3DBR00.0A0A0D3DBR0_BRAOL; Uncharacterized protein
TrEMBLA0A3P6F6370.0A0A3P6F637_BRAOL; Uncharacterized protein
STRINGBo7g089140.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16822786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]