PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013598969.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 368aa    MW: 42493.6 Da    PI: 9.1788
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013598969.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.81.7e-17291031294
                     HTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3  12 ksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ++ l++p +f+++h +gk +e+++ +l++  s ++W+v++  ++++    +t+GWk+F+ a++L+ gD+++F+++g++ f  +v
  XP_013598969.1  29 DTH-LTIPVTFFSKHiEGK-NEQRKAKLRShASDKTWKVTI--DGRR----FTRGWKDFATAHDLRIGDVIIFRHEGDMVF--NV 103
                     555.9**********7444.46679999997888*******..9998....9***********************999988..54 PP
2B372.36.1e-23151244498
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     + +++++l+++ l lp +  +++ ++k+++ ++++ +++g+sW+v l++r +sg+y++++GW++F+++n+ k gD +vF l+g+ ++++++ ++ 
  XP_013598969.1 151 AQVTASNLRLDTLDLPMEAESSNALNKRCH-EMIVVNKEGNSWTVSLRFRESSGSYYIRGGWRRFCRDNRRKIGDLMVFNLVGDGKTSPMICICP 244
                     4568999*************9*****9887.9999*************************************************9999****997 PP
3B348.71.4e-15272367197
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTE.EEE-TTHHHHHHHHT--.TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgr.yvltkGWkeFvkangLk.egDfvvFkldgrsefe 91 
                     f+++ ++ ++++s+ l+lp +f++ +g+k + + +++l+d++g +W  kl    +  + +   l+kGWk+F++an++   g  ++++l++ +++ 
  XP_013598969.1 272 FVTISLTRYNFRSSKLILPATFMKINGIK-R-QNEIILMDKHGVRWVTKLVKdgS--KYGkRGLGKGWKDFCEANDVLkIGQPFLLELVW-EDTL 361
                     7788899****************655555.4.459***************77433..3333579***********9644**********9.5555 PP

                     .EEEEE CS
              B3  92 lvvkvf 97 
                     +v+k++
  XP_013598969.1 362 PVLKFC 367
                     888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.7E-2314111IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-2115115IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.46417109IPR003340B3 DNA binding domain
CDDcd100177.21E-1518106No hitNo description
SMARTSM010192.3E-2220109IPR003340B3 DNA binding domain
PfamPF023622.0E-1131101IPR003340B3 DNA binding domain
SuperFamilySSF1019364.32E-19147240IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.5E-19148236IPR015300DNA-binding pseudobarrel domain
CDDcd100171.00E-19148244No hitNo description
PROSITE profilePS5086314.17148246IPR003340B3 DNA binding domain
SMARTSM010194.0E-23149246IPR003340B3 DNA binding domain
PfamPF023621.0E-21151244IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.8E-19264367IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-18266367IPR015300DNA-binding pseudobarrel domain
CDDcd100175.64E-13271368No hitNo description
PfamPF023621.8E-14272368IPR003340B3 DNA binding domain
SMARTSM010191.8E-19272368IPR003340B3 DNA binding domain
PROSITE profilePS5086311.209272368IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MNCLNSMANP PLESPTNPHF FQPLLPGFDT HLTIPVTFFS KHIEGKNEQR KAKLRSHASD  60
KTWKVTIDGR RFTRGWKDFA TAHDLRIGDV IIFRHEGDMV FNVTPFGPSC CEIHYEQSHL  120
IKEEEFDNND DDNENHCRTK SSFSFDYCFV AQVTASNLRL DTLDLPMEAE SSNALNKRCH  180
EMIVVNKEGN SWTVSLRFRE SSGSYYIRGG WRRFCRDNRR KIGDLMVFNL VGDGKTSPMI  240
CICPEEECSE LVRKAKRRSK WVASSSSRRN RFVTISLTRY NFRSSKLILP ATFMKINGIK  300
RQNEIILMDK HGVRWVTKLV KDGSKYGKRG LGKGWKDFCE ANDVLKIGQP FLLELVWEDT  360
LPVLKFCS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013598969.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013598969.10.0PREDICTED: B3 domain-containing protein REM7-like
RefseqXP_013598970.10.0PREDICTED: B3 domain-containing protein REM7-like
TrEMBLA0A3P6A3W00.0A0A3P6A3W0_BRACM; Uncharacterized protein
STRINGBra023988.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.16e-88B3 family protein