PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013598548.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 346aa    MW: 37883.1 Da    PI: 10.4754
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013598548.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.8e-31277335259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D+++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +d  ++++tYeg+Hnh 
  XP_013598548.1 277 SDEFSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERAPDDAMMLIVTYEGDHNHA 335
                     69************************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.6E-15240274IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.808.2E-33264336IPR003657WRKY domain
PROSITE profilePS5081129.895271337IPR003657WRKY domain
SuperFamilySSF1182909.42E-26274335IPR003657WRKY domain
SMARTSM007741.2E-37276336IPR003657WRKY domain
PfamPF031061.7E-26278334IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MTVELMMSSS SYGGGKVKRE EDGGFPAEKG DTALKEAASA GIHGVEEFLK LIGQRQPTEE  60
KQTEITAVTD VAVNSFKKVI SLLGRSRTGH ARFRRGPVTT TKPEEVVVKT EEKPRTTTTT  120
TVVLNREKTE KHGGSAFRVY CPTPIHRRPP LSHAHAQTKN GSSSPAPLLP NGKPHQEPPP  180
STIHFAPSPP VSAANSFMSS HRCETESNQM SSGFEFTNPS SQFSGSRGKP PLSSASLKRK  240
CSSSPSGRCH CTKKRKSKVK RVIRVPAVSS KMADIPSDEF SWRKYGQKPI KGSPHPRGYY  300
KCSSMRGCPA RKHVERAPDD AMMLIVTYEG DHNHAMVLQT PHEKTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-22264336273WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237255KRKCSSSPSGRCHCTKKRK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013598548.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931540.0KM593154.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY79) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013598548.10.0PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX01e-175WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A0D3DFU40.0A0A0D3DFU4_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EW330.0A0A3P6EW33_BRAOL; Uncharacterized protein
STRINGBo7g109430.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17152887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.11e-149WRKY DNA-binding protein 7