PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013598530.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Nin-like
Protein Properties Length: 769aa    MW: 85968 Da    PI: 5.5167
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013598530.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK92.82.5e-29506556252
          RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      k+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++
  XP_013598530.1 506 DKNITLDVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIQRWPSRKIKKV 556
                     69***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.836495576IPR003035RWP-RK domain
PfamPF020421.2E-25508556IPR003035RWP-RK domain
SuperFamilySSF542772.09E-21662752No hitNo description
Gene3DG3DSA:3.10.20.2402.0E-20669745No hitNo description
SMARTSM006663.8E-24670753IPR000270PB1 domain
PROSITE profilePS5174528.257670754IPR000270PB1 domain
PfamPF005648.8E-19671752IPR000270PB1 domain
CDDcd064072.59E-40671752No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 769 aa     Download sequence    Send to blast
MEDSYLKTDN AVMDTGFMDG LLLDGCWLET TDGSDFLNLT PFDPSSFIWS PTQDTSALVS  60
HMYGQDCAER SSLEDFQWNK RWWIGPGGGA SSVTERLVQA VEHIRDYTTE RGSLIQLWVP  120
VNRGGKRVLT TKEQPFSHDP LCQRLANYRE ISVNYHFSAE QDDSKALAGL PGRVFLGKLP  180
EWTPDVRFFR SEEYPRVQHA QDCGVRGTLA IPVFEQGSKI CLGVIEVVMT TEMVKLRPEL  240
ESICRALQAV DLRSTEVPIQ PSLKGCDLSY KAALPEIQNL LRCACETHNL PLAQTWVSCL  300
QQTKTGCRHN DENYIHCIST IDDACYVGDP TVLEFHEACS EHHLLKGQGV AGQAFLTNGP  360
CFSTDVSNYK KSEYPLSHHA NMFGLHGAVA IRLRCVHTGS ADFILEFFLP KECDDVEEQR  420
KMLDALSSIM AHVPRSLRTV TDKELEEESE VIVTPKIENT LVFDGGDKPN DVFGLKRGYE  480
YKSSESSMFS CGGFSSMAEK KRTKADKNIT LDVLRQYFAG SLKDAAKSIG VCPTTLKRIC  540
RQHGIQRWPS RKIKKVGHSL QKIQRVIDSV ECVSGPLPIS SFYANFPNLA SHEPSQQDKI  600
SPPLPQPLQL SKSPSSSSSQ CCSSGATTDP SQGDVRTGSS LDETVLTLSS LENNPQGGTH  660
LLSSSQDDDS LRIKVSYGEE KIRFRMRDSR RLTDLLWEIG KRFGLEDMSR YDLKYLDEDN  720
EWVLLTCDED VEECVDVCRT TPSHTTIMLL LHVSSHCFPE RSSATGYSL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013598530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0910150.0AY091015.1 Arabidopsis thaliana putative nodule inception protein (At1g20640) mRNA, complete cds.
GenBankAY1172370.0AY117237.1 Arabidopsis thaliana putative nodule inception protein (At1g20640) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013598530.10.0PREDICTED: protein NLP4-like
SwissprotQ9LE380.0NLP4_ARATH; Protein NLP4
TrEMBLA0A0D3D7S90.0A0A0D3D7S9_BRAOL; Uncharacterized protein
STRINGBo7g061470.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34612663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20640.20.0Nin-like family protein