PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013598455.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ARR-B | ||||||||
Protein Properties | Length: 600aa MW: 65834.8 Da PI: 6.6799 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 91 | 1e-28 | 202 | 255 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av++L G +kA+Pk+ile+m+v+gLt+e+v+SHLQkYR+ XP_013598455.1 202 KPRVVWSVELHQQFVAAVNHL-GVDKAVPKKILEMMNVQGLTRENVASHLQKYRI 255 79*******************.********************************7 PP | |||||||
2 | Response_reg | 76.7 | 8.6e-26 | 22 | 130 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+vdD+p+ +++l+++l+ y +v+ + +e al+ll++++ +D+++ D+ mp+m+G++ll++ e +lp+i+++a ++++ +l+ + G XP_013598455.1 22 VLVVDDDPTCLMILERMLRTCLY-RVTKCNRAEIALTLLRKNKngFDIVISDVHMPDMNGFKLLEHVGLEM-DLPVIMMSADDSKSVVLKGVTHG 114 89*********************.***************999999**********************6644.8********************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l Kp+ +e+l + XP_013598455.1 115 AVDYLIKPVRIEALKN 130 ************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 3.7E-172 | 5 | 592 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 8.25E-35 | 19 | 145 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 1.4E-40 | 19 | 161 | No hit | No description |
SMART | SM00448 | 1.3E-29 | 20 | 132 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 40.972 | 21 | 136 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.5E-22 | 22 | 130 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 6.65E-27 | 23 | 135 | No hit | No description |
PROSITE profile | PS51294 | 12.263 | 199 | 258 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.18E-19 | 200 | 259 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-29 | 201 | 260 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.8E-25 | 202 | 255 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.1E-8 | 204 | 254 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 600 aa Download sequence Send to blast |
MLNPGVVGGS SNSDPFPAGL RVLVVDDDPT CLMILERMLR TCLYRVTKCN RAEIALTLLR 60 KNKNGFDIVI SDVHMPDMNG FKLLEHVGLE MDLPVIMMSA DDSKSVVLKG VTHGAVDYLI 120 KPVRIEALKN IWQHVVRKKR NVSEHSGSVE ETGGDRQQQQ RDDGDDGGGD NNSSSGNNEG 180 NLRRRKEEEQ GDDKEDTSSL KKPRVVWSVE LHQQFVAAVN HLGVDKAVPK KILEMMNVQG 240 LTRENVASHL QKYRIYLKRL GGVSQHQGSM NHSFMTGQDP SYGPLNGFDL QSLAAAGQLP 300 AQSLAQLQAA GLGWSSSSLI KPGTTSVDQR SIFTFQSSKF GDGHGQMMMN GGSGNKQMSL 360 LHGVPTGHMR LQQQQMAGMR VADPSMLQQQ SMLSRRSLLD DAVVVRNSSR VLPGATHSVF 420 NNSFPLASAP GMSVTDTKGG SSSATAAFCN PSYDILNSFP QQQHHNNNRV NEWDPPNMGM 480 VFNSHQDNTA SAAFSTSEAY SSSSTHKRER EAELVAEHGQ NQQQPQSRSV NPMNQVYMNG 540 GGSVRVKTET VTCPPQATTM FHEQYSNQED LLSALLKQEG FPLLDSEFDF EGYSFDNIPV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-23 | 198 | 260 | 1 | 63 | ARR10-B |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in pollen. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:15173562, ECO:0000269|PubMed:9891419}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013598455.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189632 | 1e-174 | AC189632.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS003O10, complete sequence. | |||
GenBank | AC232469 | 1e-174 | AC232469.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026A07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013598455.1 | 0.0 | PREDICTED: two-component response regulator ARR2-like | ||||
Swissprot | Q9ZWJ9 | 0.0 | ARR2_ARATH; Two-component response regulator ARR2 | ||||
TrEMBL | A0A0D3DEC1 | 0.0 | A0A0D3DEC1_BRAOL; Two-component response regulator | ||||
TrEMBL | A0A3P6EJ19 | 0.0 | A0A3P6EJ19_BRAOL; Two-component response regulator | ||||
STRING | Bo7g104190.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2403 | 27 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 0.0 | response regulator 2 |