PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013598423.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 756aa MW: 83349 Da PI: 5.8338 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.5 | 1.3e-19 | 63 | 118 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++eLe++F+++++p+ ++r+eL+++l+L+ qVk+WFqN+R+++k XP_013598423.1 63 KKRYHRHTQRQIQELESFFKECPHPDDKQRKELSRELNLEPLQVKFWFQNKRTQMK 118 688999***********************************************998 PP | |||||||
2 | START | 215.2 | 2.2e-67 | 263 | 482 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS START 1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 ela +a++elv++a+ ++p+Wv+s e++n++e+ ++f+++ + ++ea+r+s+vv+m++ +lve+l+d++ qW+ + +a tle XP_013598423.1 263 ELAVAAMEELVRMAQTGDPLWVSSDsavEILNEEEYFRTFPRGIGpkplgLRSEASRESTVVIMNHINLVEILMDVN-QWSSVFCgivsRALTLE 356 57899*******************999***************999********************************.******99999****** PP EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS START 84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171 v+s+g galq+m+ae+q++splvp R+ +fvRy++++ + +w++vdvS+ds ++ p ++R +++pSg+li++++ng+skvtwveh++ XP_013598423.1 357 VLSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKKHIDNTWAVVDVSLDSLRPSP----IIRNRRRPSGCLIQELQNGYSKVTWVEHTE 447 ***********************************************************99....7***************************** PP --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 172 lkgrlphwllrslvksglaegaktwvatlqrqcek 206 +++r++h ++++lv++gla+gak+wvatl+rqce+ XP_013598423.1 448 VDDRSVHTMYKPLVNTGLAFGAKRWVATLDRQCER 482 *********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-22 | 44 | 118 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.1E-19 | 52 | 120 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.151 | 60 | 120 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.9E-18 | 61 | 124 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.2E-17 | 63 | 118 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.82E-19 | 63 | 121 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 95 | 118 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 45.064 | 254 | 485 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.37E-34 | 255 | 484 | No hit | No description |
CDD | cd08875 | 1.46E-122 | 258 | 481 | No hit | No description |
SMART | SM00234 | 1.4E-77 | 263 | 482 | IPR002913 | START domain |
Pfam | PF01852 | 1.8E-56 | 264 | 482 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 4.6E-5 | 362 | 481 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 9.62E-24 | 502 | 681 | No hit | No description |
SuperFamily | SSF55961 | 9.62E-24 | 709 | 748 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009913 | Biological Process | epidermal cell differentiation | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0090627 | Biological Process | plant epidermal cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 756 aa Download sequence Send to blast |
MYQPNMFESH HHMFDMTPKN SDNDLGLTGS REDDFETRSG AEVTMENPLE EELQDPNQRP 60 NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRELN LEPLQVKFWF QNKRTQMKAQ 120 HERHENSILK SDNDKLRAEN NRYKDALNNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE 180 EIDRISAIAA KYVGKPMLTH SSSSFPQLTS SHHIPSRSLD LEVGNFGNTN NSQTGFLGDM 240 YGTSDIMRSV SIHNDADKPM IVELAVAAME ELVRMAQTGD PLWVSSDSAV EILNEEEYFR 300 TFPRGIGPKP LGLRSEASRE STVVIMNHIN LVEILMDVNQ WSSVFCGIVS RALTLEVLST 360 GVAGNYNGAL QVMTAEFQVP SPLVPTRENY FVRYCKKHID NTWAVVDVSL DSLRPSPIIR 420 NRRRPSGCLI QELQNGYSKV TWVEHTEVDD RSVHTMYKPL VNTGLAFGAK RWVATLDRQC 480 ERLASSMASN IPAGDLSVIT SPEGRKSMLK LAERMVMSFC SGVGASNAHA WTTLATAGSD 540 DVRVMTRKSM DDPGRPPGIV LSAATSFWIP VAPKRVFDFL RDENSRSEWD ILSNGGLVQE 600 MAHIANGRDP GNSVSLFRVN SANSGQSNML ILQESCTDAS GSYVIYAPVD IMAMNVVLSG 660 GDPDYVALLP SGFAILPDGS SRVNASAGAE GGGDGNNLEV VTSTASNCGS LLTVAFQILV 720 DSVPTAKLSL GSVATVNSLI KCTVERIKAA LACDGA |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First expressed in the apical cell after the first asymmetric division of the zygote. Expressed in all proembryo cells until the eight-cell stage, and then restricted to the protoderm in the 16-cell proembryo. Not detected in the torpedo stage, but reappeared later in the L1 layer of the shoot apical meristem in the mature embryo. After germination, the L1 layer-specific expression pattern is maintained in the vegetative shoot apical meristem, inflorescence, floral meristems, and the young floral organ primordia. Finally, expressed in the protoderm of the ovule primordia and integuments and gradually restricted to the endothelium surrounding the embryo sac. {ECO:0000269|PubMed:10571886, ECO:0000269|PubMed:8989876}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013598423.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK229970 | 0.0 | AK229970.1 Arabidopsis thaliana mRNA for L1 specific homeobox gene ATML1/ovule-specific homeobox protein A20, complete cds, clone: RAFL22-43-B20. | |||
GenBank | AY091104 | 0.0 | AY091104.1 Arabidopsis thaliana putative L1-specific homeobox gene ATML1/ovule-specific homeobox protein A20 (At4g21750) mRNA, complete cds. | |||
GenBank | AY150491 | 0.0 | AY150491.1 Arabidopsis thaliana putative L1-specific homeobox gene ATML1/ovule-specific homeobox protein A20 (At4g21750) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013598423.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1 | ||||
Refseq | XP_013598424.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1 | ||||
Refseq | XP_013598425.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1 | ||||
Swissprot | Q8RWU4 | 0.0 | ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1 | ||||
TrEMBL | A0A0D3DFA7 | 0.0 | A0A0D3DFA7_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g107550.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM491 | 28 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21750.2 | 0.0 | HD-ZIP family protein |