PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013598287.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 291aa MW: 31836.2 Da PI: 6.6825 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 52.9 | 8e-17 | 135 | 181 | 4 | 50 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 lkr rr+ +NRe+ArrsR+RK+++++ Le v++L++eN++L k+l XP_013598287.1 135 LKRMRRMHSNRESARRSRRRKQEQLADLESQVDSLKGENTTLYKQLI 181 8*****************************************98875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 7.7E-12 | 132 | 196 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.921 | 134 | 180 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 4.4E-15 | 134 | 180 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 8.04E-12 | 135 | 182 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 7.8E-12 | 136 | 180 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 139 | 154 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF12498 | 3.3E-5 | 203 | 280 | IPR020983 | Basic leucine-zipper, C-terminal |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 291 aa Download sequence Send to blast |
MDGHTAKDTG MKRSASELAL QEYLTKVMSS SSALSRQEST SPLDPSFDPM NQDHTGELRD 60 RHLLSESLIP AGVLLDAQSS ICENLSADSP VSANKPEVRR RARRTASVSS HGHSDEEDAE 120 TEAGQSEMTN DPNHLKRMRR MHSNRESARR SRRRKQEQLA DLESQVDSLK GENTTLYKQL 180 IDATQLFRSA GTNNRILKSD VETLRIKVKL AEDLVARGSL TSSLNQLLQT HLSPSPQSIN 240 SLHYTGSTSP AVTVHSDQSM FPGITLSGQN SSPGLGNVSS EAVSCVSDIW P |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 148 | 155 | RRSRRRKQ |
2 | 150 | 155 | SRRRKQ |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Present in silique vasculature and funiculi. In the anthers, restricted to the connective tissue at pre- and post-dehiscence stages and detected in the vascular tissue of the stamen filament. {ECO:0000269|PubMed:18841482}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots, stems, young leaves, and flowers, mostly in vascular tissues (e.g. phloem). {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:18841482}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013598287.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by glucose. {ECO:0000269|PubMed:18841482}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF310223 | 0.0 | AF310223.1 Arabidopsis thaliana bZIP protein BZO2H2 mRNA, complete cds. | |||
GenBank | AK226873 | 0.0 | AK226873.1 Arabidopsis thaliana mRNA for bZIP protein BZO2H2, clone: RAFL09-07-B02. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013598287.1 | 0.0 | PREDICTED: basic leucine zipper 9 | ||||
Swissprot | Q9FUD3 | 1e-166 | BZIP9_ARATH; Basic leucine zipper 9 | ||||
TrEMBL | A0A0D3DD03 | 0.0 | A0A0D3DD03_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g096540.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6370 | 26 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G24800.1 | 1e-139 | basic leucine zipper 9 |
Publications ? help Back to Top | |||
---|---|---|---|
|