PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013598265.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 547aa    MW: 59883.5 Da    PI: 6.5623
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013598265.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.61.6e-30173229259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgynWrKYGqK vkgse+prsYY+Ct+++C+vkkkvers+ +++++ei+Y  +Hnh 
  XP_013598265.1 173 DDGYNWRKYGQKLVKGSEYPRSYYKCTHPNCEVKKKVERSR-EGHITEIVYVKTHNHL 229
                     8****************************************.***************5 PP
2WRKY101.16.6e-32353410259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+++d + v +tY g+Hnh 
  XP_013598265.1 353 EDGYRWRKYGQKVVKGNPNPRSYYKCTASGCNVTKHVERASDDLTSVLTTYIGKHNHA 410
                     8********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.2E-27170231IPR003657WRKY domain
SuperFamilySSF1182901.7E-24171231IPR003657WRKY domain
SMARTSM007748.6E-31172230IPR003657WRKY domain
PfamPF031068.0E-24173228IPR003657WRKY domain
PROSITE profilePS5081122.366173231IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.9E-34337412IPR003657WRKY domain
SuperFamilySSF1182901.07E-27344412IPR003657WRKY domain
PROSITE profilePS5081134.601347412IPR003657WRKY domain
SMARTSM007742.1E-36352411IPR003657WRKY domain
PfamPF031061.5E-24353409IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009555Biological Processpollen development
GO:0009846Biological Processpollen germination
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MPGFDNNFAV MGEWLDPIPN HKKRSKAELE REVHLEDIKN KGFMHASFQE KPCYSSNGLS  60
ERIAARTGFK VPRLKTESIF PSTCLAISSP GVSPATLLES PVFLSNPLTS PTTGKLSSLP  120
SDKAKYEFIE DISLTLSLDP TTNIGSEPDD SQAYEQAHDS DLGDSMPSGA PGDDGYNWRK  180
YGQKLVKGSE YPRSYYKCTH PNCEVKKKVE RSREGHITEI VYVKTHNHLK PPTNRRSGTG  240
RSGTGDDMQI DGTGTKENLQ WTSPVYEEVG YGSHSGSMQV QSGTQFGYGG VATDAFSKDE  300
EDRTSYMSVS LGYDGQVDES EPKRRKLETS GSSRGTREPK VVVKTTSDID ILEDGYRWRK  360
YGQKVVKGNP NPRSYYKCTA SGCNVTKHVE RASDDLTSVL TTYIGKHNHA VPAARNSSHV  420
GSGSSGTVQG GLATQTHNQH VHYPVPRSSS EGMVTANSSL HDFQPYLRSP SGFSVYYVGE  480
AELTDISVSG LPIGQERFLG LEALATGDPD GLMLQLAAEP KVEQMSQQEL GLSRSSLIDI  540
MSRLPQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-31173413878Probable WRKY transcription factor 4
2lex_A9e-31173413878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013598265.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300510.0KF430051.1 Brassica rapa WRKY transcription factor 34 (WRKY34) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013598265.10.0PREDICTED: probable WRKY transcription factor 34
SwissprotO655900.0WRK34_ARATH; Probable WRKY transcription factor 34
TrEMBLA0A0D3DG930.0A0A0D3DG93_BRAOL; Uncharacterized protein
STRINGBo7g110920.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141811524
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26440.10.0WRKY DNA-binding protein 34
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Hu X, et al.
    Proteasome-mediated degradation of FRIGIDA modulates flowering time in Arabidopsis during vernalization.
    Plant Cell, 2014. 26(12): p. 4763-81
    [PMID:25538183]
  3. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]