PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013598181.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 510aa    MW: 55891.1 Da    PI: 5.0293
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013598181.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY80.41.9e-25236292259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +DgynWrKYGqK+vk+ + +rsYYrCt+++C++kk +e+s++ +++vei+ +g H he
  XP_013598181.1 236 RDGYNWRKYGQKQVKSPKGSRSYYRCTYSDCCAKK-IECSNDSGNMVEIVTKGLHSHE 292
                     6********************************98.*********************8 PP
2WRKY97.11.2e-30396453259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK+vkg+++pr+YYrCtsagCpv+k++e++  +++ v+itY+geHnh+
  XP_013598181.1 396 SDGYRWRKYGQKMVKGNPNPRNYYRCTSAGCPVRKHIETAVGNTRDVVITYKGEHNHD 453
                     7********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-20232294IPR003657WRKY domain
SuperFamilySSF1182906.15E-20233294IPR003657WRKY domain
SMARTSM007742.7E-23235293IPR003657WRKY domain
PfamPF031064.3E-17237291IPR003657WRKY domain
PROSITE profilePS5081116.685237294IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-31380455IPR003657WRKY domain
SuperFamilySSF1182901.44E-26389455IPR003657WRKY domain
PROSITE profilePS5081133.602390455IPR003657WRKY domain
SMARTSM007742.2E-34395454IPR003657WRKY domain
PfamPF031063.6E-23397453IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MEKSTQETVK NEKVKPEKEL RDGLSQLRDE ESLGTIGDDM EDVHDEAIRE VLAKDQVEDV  60
RENSPVEPND QDVIEETDCG KENVASEVVP VDEVAVENRE VEPSPTLNAS SDSSMVETSL  120
PSDPSASQSQ GLLLEQKSDS QVVNNLSVSP PVLRTDSDKE DIVSVVAPVD EVAVENLEVK  180
TCPALTPSSD PSMVEPSLPS DPLAAKSQDQ SLLQKSYDSR VVMNLSVSPA LRTPPRDGYN  240
WRKYGQKQVK SPKGSRSYYR CTYSDCCAKK IECSNDSGNM VEIVTKGLHS HEPPRKSSFS  300
PREIRAASAV TPVLEVDTVV ATVPSVSATP PPTKENICQS PTTVERKRTC ENEAVEEPEP  360
KRRLKNDNTQ SSDSVSKPGK KHKLVVHAAS DVGISSDGYR WRKYGQKMVK GNPNPRNYYR  420
CTSAGCPVRK HIETAVGNTR DVVITYKGEH NHDTPVPKKR HDTPSSVLLS PTSMRTRLEV  480
QVNIPSSSSQ CSVGRESEKQ SSEALDVVGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-25383455274WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013598181.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931560.0KM593156.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY82) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013598181.10.0PREDICTED: probable WRKY transcription factor 32 isoform X2
RefseqXP_013707516.10.0probable WRKY transcription factor 32 isoform X2
SwissprotP595831e-176WRK32_ARATH; Probable WRKY transcription factor 32
TrEMBLA0A0D3DH360.0A0A0D3DH36_BRAOL; Uncharacterized protein
STRINGBo7g114840.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.11e-165WRKY DNA-binding protein 32