PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013598142.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | SBP | ||||||||
Protein Properties | Length: 373aa MW: 41653.3 Da PI: 8.119 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 125.4 | 2.3e-39 | 152 | 228 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cq++gCe dls+ak+yhr+h+vC+ hsk+pvv+v g+e+rfCqqCsr h++sefDe+krsCr+rL++hn+rrrk+q XP_013598142.1 152 RCQIDGCELDLSSAKDYHRKHRVCQSHSKCPVVTVGGMERRFCQQCSRLHAVSEFDEKKRSCRKRLSHHNARRRKPQ 228 6**************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.9E-31 | 145 | 214 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.462 | 150 | 227 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 7.98E-37 | 151 | 228 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.1E-30 | 153 | 226 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MDCNMVSPLW DWEHLITPNL SKTETDKKQP STTDWDIEKG EGIESIFPSF TGSSTTGFLS 60 SQLTSTNSSS PKLKSSLGDF DQVKASTALQ VASTESDLCL KLGKRSYSDE ETWGRNNNND 120 ISAVSVKLLT PPYVVAQKKS KSSCGQSMQI PRCQIDGCEL DLSSAKDYHR KHRVCQSHSK 180 CPVVTVGGME RRFCQQCSRL HAVSEFDEKK RSCRKRLSHH NARRRKPQGM FPLNPERVHN 240 GRQHTNMLWN ELSLNTRSEE KYAAWGTTYE TKPTQMESGF TLNFQRGSGA EEQQVFASSN 300 LSFSDSAYQT SAGKSNFQLP SKGVGEYSGG LYETQDFYSA LSLLSTSSDS HGTKHHPMVE 360 SQSIHGTFPT HFI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-24 | 153 | 226 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 208 | 225 | KKRSCRKRLSHHNARRRK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed constitutively during plant development, weak increase during flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:14573523}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013598142.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013598139.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 10 isoform X1 | ||||
Refseq | XP_013598140.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 10 isoform X1 | ||||
Refseq | XP_013598141.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 10 isoform X1 | ||||
Refseq | XP_013598142.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 10 isoform X1 | ||||
Refseq | XP_013598143.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 10 isoform X1 | ||||
Refseq | XP_013598145.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 10 isoform X1 | ||||
Swissprot | Q8S9L0 | 1e-177 | SPL10_ARATH; Squamosa promoter-binding-like protein 10 | ||||
TrEMBL | A0A0D3D6G9 | 0.0 | A0A0D3D6G9_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g049940.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27370.4 | 1e-150 | squamosa promoter binding protein-like 10 |
Publications ? help Back to Top | |||
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