PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013598131.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 293aa    MW: 32306.1 Da    PI: 5.1999
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013598131.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_151.62.1e-16209266259
                     XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                     ++ +r+rr++kNRe+A rsR+RK+a++ eLe+ +++Le+eN++L  e+ee +ke ++ 
  XP_013598131.1 209 AAAQRQRRMIKNRESAARSRERKQAYQVELETLAAKLEEENEKLSVEIEEKRKERYQK 266
                     5789*********************************************999987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.6E-13205263No hitNo description
SMARTSM003382.4E-11208272IPR004827Basic-leucine zipper domain
PfamPF001701.6E-15209267IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.3210262IPR004827Basic-leucine zipper domain
CDDcd147077.60E-18212258No hitNo description
SuperFamilySSF579593.69E-10212264No hitNo description
PROSITE patternPS000360215230IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MASFKVMHSS TSTNSDPSRR IPSSSIRPQP FRRDPNARIL GGYDGYSPGT MTVEGILHET  60
FASDPPATDS SLLMDAAPTP MEVATVSGGT DTRGKSVDEV WREIVSGEGK GMKEEAETQH  120
DEMMTLEDFL AKATGEDGGG GGESDDVDAK IPPESYGFDH HNPFQMIDKV EGSIVAFGNG  180
VDVYGGGGGG GGGARGKRAR VMMEPLDKAA AQRQRRMIKN RESAARSRER KQAYQVELET  240
LAAKLEEENE KLSVEIEEKR KERYQKLLEF LIPVVEKPKQ EPRFLRRIRS LEW
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013598131.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894021e-179AC189402.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB057L05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013598131.10.0PREDICTED: G-box-binding factor 4
SwissprotP427775e-69GBF4_ARATH; G-box-binding factor 4
TrEMBLA0A0D3D8T70.0A0A0D3D8T7_BRAOL; Uncharacterized protein
STRINGBo7g067030.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38522855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.11e-105bZIP family protein