PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013598124.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 287aa    MW: 31142.6 Da    PI: 5.7812
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013598124.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like108.14.6e-341569155
         G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  XP_013598124.1 15 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 69
                    79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.3031272IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-321470IPR009057Homeodomain-like
SuperFamilySSF466896.45E-181469IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-251570IPR006447Myb domain, plants
PfamPF002491.1E-91768IPR001005SANT/Myb domain
PfamPF143792.1E-23102147IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MEADDGGNNS SHASKQRLRW THELHERFVD AVAQLGGPDR ATPKGVLRVM GVQGLTIYHV  60
KSHLQKYRLA KYLPDSSSEG KKTDKKESGD VLSGLDGSPG TQITEALKLQ MEVQKRLHEQ  120
LEVQRQLQLR IEAQGKYLKK IIEEQQRLSG ALGESSGPVT GESDPATPAP TSEFPLQGKS  180
GKECEPDKSL SVDESHSSYR EALTPDSGCN VGSQDESAGE ERSSKKPRLM RGGAAGYTNE  240
MVVAHPILES GMNASYHQSD HALAFDHPST SLLGAEDGLD KVSEDVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-241572158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-241572158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-241572158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-241572158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013598124.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0847250.0AY084725.1 Arabidopsis thaliana clone 115924 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013598124.10.0PREDICTED: protein PHR1-LIKE 1-like
RefseqXP_013598125.10.0PREDICTED: protein PHR1-LIKE 1-like
SwissprotQ9SJW00.0PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A0D3D9Z00.0A0A0D3D9Z0_BRAOL; Uncharacterized protein
STRINGBo7g077990.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87532536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-169G2-like family protein