PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013598096.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 213aa    MW: 23172.5 Da    PI: 6.0379
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013598096.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.31.1e-10755346
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +WT+eE+e l  +v ++G g W++I +          R+  ++k++w++
   XP_013598096.1  7 KWTPEEEEALMAGVLEHGIGKWRSILANPEyssvlHSRSNVDLKDKWRN 55
                     8**********************************9***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.248161IPR017930Myb domain
SuperFamilySSF466891.79E-15258IPR009057Homeodomain-like
SMARTSM007173.6E-5459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-14555IPR009057Homeodomain-like
PfamPF002491.7E-7655IPR001005SANT/Myb domain
CDDcd116604.30E-19656No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MGAPKHKWTP EEEEALMAGV LEHGIGKWRS ILANPEYSSV LHSRSNVDLK DKWRNISVAA  60
TCGSRKKAKQ GDDGGQQIIP ASAPLALSYE PPQDLFTSVD NMILEAITNF TGPLGPDRNS  120
ILLYAEVKAN MPMYMEPLVT SRLEHLINIE TVVKIEHMYS VSQGYAAAKA IAEAELALAE  180
AEVAAREADN AEAKAEAARI FAKVAMKALK ATR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15060584}.
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand. {ECO:0000269|PubMed:19102728}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013598096.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013696319.21e-156telomere repeat-binding factor 3-like
SwissprotQ9M2X33e-59TRB3_ARATH; Telomere repeat-binding factor 3
TrEMBLA0A078GDE31e-155A0A078GDE3_BRANA; BnaC07g31550D protein
TrEMBLA0A0D3DDQ81e-155A0A0D3DDQ8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6F1T51e-155A0A3P6F1T5_BRAOL; Uncharacterized protein
STRINGBo7g099090.11e-155(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2026256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49850.17e-60telomere repeat binding factor 3
Publications ? help Back to Top
  1. Denis E, et al.
    WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.
    Plant J., 2017. 90(3): p. 560-572
    [PMID:28218997]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]