PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013598039.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 1304aa MW: 143408 Da PI: 7.4852 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.3 | 8.7e-06 | 1283 | 1304 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ f+++G Ck G++C+F H+ XP_013598039.1 1283 KICK-FYESGNCKKGASCSFWHP 1304 6899.8999***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.40.10 | 1.0E-7 | 131 | 195 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57903 | 1.75E-7 | 132 | 189 | IPR011011 | Zinc finger, FYVE/PHD-type |
PROSITE profile | PS50016 | 8.814 | 137 | 203 | IPR019787 | Zinc finger, PHD-finger |
CDD | cd15568 | 1.41E-19 | 139 | 184 | No hit | No description |
SMART | SM00249 | 4.9E-7 | 139 | 185 | IPR001965 | Zinc finger, PHD-type |
PROSITE pattern | PS01359 | 0 | 140 | 200 | IPR019786 | Zinc finger, PHD-type, conserved site |
SMART | SM00151 | 0.0036 | 343 | 433 | IPR019835 | SWIB domain |
SuperFamily | SSF47592 | 5.89E-19 | 351 | 429 | IPR003121 | SWIB/MDM2 domain |
Gene3D | G3DSA:1.10.245.10 | 2.7E-21 | 352 | 434 | IPR003121 | SWIB/MDM2 domain |
Pfam | PF02201 | 1.5E-11 | 357 | 428 | IPR003121 | SWIB/MDM2 domain |
SMART | SM00719 | 3.4E-47 | 487 | 597 | IPR004343 | Plus-3 domain |
PROSITE profile | PS51360 | 18.756 | 487 | 620 | IPR004343 | Plus-3 domain |
SuperFamily | SSF159042 | 1.96E-25 | 488 | 616 | IPR004343 | Plus-3 domain |
Pfam | PF03126 | 2.0E-17 | 492 | 595 | IPR004343 | Plus-3 domain |
SuperFamily | SSF55277 | 1.1E-15 | 756 | 812 | IPR003169 | GYF domain |
PROSITE profile | PS50829 | 15.615 | 759 | 813 | IPR003169 | GYF domain |
CDD | cd00072 | 7.71E-19 | 759 | 816 | No hit | No description |
SMART | SM00444 | 1.2E-14 | 760 | 815 | IPR003169 | GYF domain |
Pfam | PF02213 | 1.7E-11 | 761 | 805 | IPR003169 | GYF domain |
Gene3D | G3DSA:3.30.1490.40 | 1.1E-16 | 761 | 813 | IPR003169 | GYF domain |
SuperFamily | SSF90229 | 7.85E-6 | 1279 | 1303 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.155 | 1279 | 1304 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-4 | 1283 | 1303 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1304 aa Download sequence Send to blast |
MKNQQKQLQR GASSRGEESS VRGIDLMRVD QCEEIDALSV PAPTVGGTVE QEAPVKRKRG 60 RPPKAHAKTP LQTQPPLPLP LQTQPTPPLP LQTQPTPPLP LQTQPPPPPP PLQTQPPPLQ 120 TQPPPPPPIT RKDDKEEDVC FICFDGGDLV LCDRRNCPKA YHPACINRDE AFFRTTAKWN 180 CGWHICSKCQ KSSSYLCYTC TFSVCKRCVA DADYVFVRGN MGLCGTCIKP IMLIENIGQG 240 DVQAVKVDFD DKLSWEYLFK VYWLCLKEEL SLTVDELMRA YNPWKEVPYT APKVELRNDH 300 TRNNVYSSGS SALDAAENGI KRRKTSDSST LPSKLDAKNP SNTPKKRPGD TNWATKELLE 360 FLSFMRNGDT SVISQFDVQG LLLDYINKKN LRDPHQESQV ICDLMLVKLF GKQRVGHIEM 420 LKLLESHFLI QEKPKDEKTT NGETTHAVPS QVVEDIGHDP PVRDRRRKMH RKTVGRVQNE 480 NLDAYAAIDV HNINLIYLRR KFLETLLDDI NKVHEKVVGT ILRIKVSGSD QKLDIHRLVQ 540 VVGTSKAAAT YQLGAKTTDV MLEILNLEKR EVISIDQLSD QNVTEDECKR LRQSIKCGLN 600 KRLTVGDILK TATTLQAMRI NEALEAEILK VKHLRDQASE KGHRKELREC VEKLGLLESP 660 EHRQRLLQEV PEVHTDPSMD PSHPSAEDAV LDNHIKAPSK GPKKKGNILN KLGNNAQTKY 720 DAPVLRSRKA VNVTKKDDCS KVHNNSSDIQ ESGKDDEESE IWHYRDPTGK TQGPFSMGQL 780 RRWKSSGHFP PYLRIWKAHE NQDESVLLTE ALAGRFDKAT TSPSSSLLPQ ELKLSQHDSG 840 RTGVDGDCLQ KNLTPVSNSA ASSSSSTVSA LPNDPKEKQV ATLLPCSGKV KDGNSVRSQP 900 QVSCPASMSV VPGHVVSPDA RATSGADGKT VEEGTNGGSV HAPNLNQEIH VPEDLEAQAA 960 ETIQSLSSCV LVKGTSGVTW STTTTTTTDA VTTTSSVMVT GGQLPQVTHQ NAVVSAAPSV 1020 KPIDLAADHA TATQTSDNTQ VAHSSGWPAI VADPDECDES VSDLLAEVEA MEQNGLPSSP 1080 TSTFHYDDDD LTKGPEKDFF NPVARMSLTP ESCRMNTSQP SILDNVSTGK SSMGTESKDN 1140 TLFNHCGTAG PELLLFAPPA PSSVSQDLTL TTTALRLGSE TTVKAGSVER LPKSLSGVSL 1200 EPSPRSSSLH DSPRGNTERS PRGNGSHQRR SGGHSRDRQW WNNGHNTSVN NNSHNNRQWP 1260 NSSRHGYDHG SGSYTAHPPK GLKICKFYES GNCKKGASCS FWHP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2naa_A | 4e-14 | 135 | 207 | 4 | 73 | Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific |
4gnd_A | 6e-14 | 137 | 206 | 15 | 81 | Histone-lysine N-methyltransferase NSD3 |
4gnd_C | 6e-14 | 137 | 206 | 15 | 81 | Histone-lysine N-methyltransferase NSD3 |
4gne_A | 6e-14 | 137 | 206 | 15 | 81 | Histone-lysine N-methyltransferase NSD3 |
4gnf_A | 6e-14 | 137 | 206 | 15 | 81 | Histone-lysine N-methyltransferase NSD3 |
4gng_A | 6e-14 | 137 | 206 | 15 | 81 | Histone-lysine N-methyltransferase NSD3 |
4gng_D | 6e-14 | 137 | 206 | 15 | 81 | Histone-lysine N-methyltransferase NSD3 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013598039.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189627 | 0.0 | AC189627.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS001M03, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013598039.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 44 isoform X2 | ||||
Swissprot | Q9SD34 | 0.0 | C3H44_ARATH; Zinc finger CCCH domain-containing protein 44 | ||||
TrEMBL | A0A0D3DDX7 | 0.0 | A0A0D3DDX7_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g100770.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51120.1 | 0.0 | DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding |