PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013598038.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 1309aa    MW: 143979 Da    PI: 7.6269
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013598038.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.38.7e-0612881309426
                      ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH    4 elCrffartGtCkyGdrCkFaHg 26  
                      ++C+ f+++G Ck G++C+F H+
  XP_013598038.1 1288 KICK-FYESGNCKKGASCSFWHP 1309
                      6899.8999***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.107.4E-8131195IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579031.75E-7132189IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.814137203IPR019787Zinc finger, PHD-finger
CDDcd155681.35E-19139184No hitNo description
SMARTSM002494.9E-7139185IPR001965Zinc finger, PHD-type
PROSITE patternPS013590140200IPR019786Zinc finger, PHD-type, conserved site
SMARTSM001510.0036343433IPR019835SWIB domain
SuperFamilySSF475925.89E-19351429IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.102.7E-21352434IPR003121SWIB/MDM2 domain
PfamPF022011.5E-11357428IPR003121SWIB/MDM2 domain
SMARTSM007193.4E-47487597IPR004343Plus-3 domain
PROSITE profilePS5136018.756487620IPR004343Plus-3 domain
SuperFamilySSF1590421.96E-25488616IPR004343Plus-3 domain
PfamPF031262.0E-17492595IPR004343Plus-3 domain
SuperFamilySSF552771.1E-15761817IPR003169GYF domain
CDDcd000727.76E-19764821No hitNo description
PROSITE profilePS5082915.615764818IPR003169GYF domain
SMARTSM004441.2E-14765820IPR003169GYF domain
PfamPF022131.7E-11766810IPR003169GYF domain
Gene3DG3DSA:3.30.1490.401.1E-16766818IPR003169GYF domain
SuperFamilySSF902297.98E-612841308IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.15512841309IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-412881308IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1309 aa     Download sequence    Send to blast
MKNQQKQLQR GASSRGEESS VRGIDLMRVD QCEEIDALSV PAPTVGGTVE QEAPVKRKRG  60
RPPKAHAKTP LQTQPPLPLP LQTQPTPPLP LQTQPTPPLP LQTQPPPPPP PLQTQPPPLQ  120
TQPPPPPPIT RKDDKEEDVC FICFDGGDLV LCDRRNCPKA YHPACINRDE AFFRTTAKWN  180
CGWHICSKCQ KSSSYLCYTC TFSVCKRCVA DADYVFVRGN MGLCGTCIKP IMLIENIGQG  240
DVQAVKVDFD DKLSWEYLFK VYWLCLKEEL SLTVDELMRA YNPWKEVPYT APKVELRNDH  300
TRNNVYSSGS SALDAAENGI KRRKTSDSST LPSKLDAKNP SNTPKKRPGD TNWATKELLE  360
FLSFMRNGDT SVISQFDVQG LLLDYINKKN LRDPHQESQV ICDLMLVKLF GKQRVGHIEM  420
LKLLESHFLI QEKPKDEKTT NGETTHAVPS QVVEDIGHDP PVRDRRRKMH RKTVGRVQNE  480
NLDAYAAIDV HNINLIYLRR KFLETLLDDI NKVHEKVVGT ILRIKVSGSD QKLDIHRLVQ  540
VVGTSKAAAT YQLGAKTTDV MLEILNLEKR EVISIDQLSD QNVTEDECKR LRQSIKCGLN  600
KRLTVGDILK TATTLQAMRI NEALEAEILK VKHLRDQASE KGHRKELREC VEKLGLLESP  660
EHRQRLLQEV PEVHTDPSMD PSHPSAEDAV LGTRKQDNHI KAPSKGPKKK GNILNKLGNN  720
AQTKYDAPVL RSRKAVNVTK KDDCSKVHNN SSDIQESGKD DEESEIWHYR DPTGKTQGPF  780
SMGQLRRWKS SGHFPPYLRI WKAHENQDES VLLTEALAGR FDKATTSPSS SLLPQELKLS  840
QHDSGRTGVD GDCLQKNLTP VSNSAASSSS STVSALPNDP KEKQVATLLP CSGKVKDGNS  900
VRSQPQVSCP ASMSVVPGHV VSPDARATSG ADGKTVEEGT NGGSVHAPNL NQEIHVPEDL  960
EAQAAETIQS LSSCVLVKGT SGVTWSTTTT TTTDAVTTTS SVMVTGGQLP QVTHQNAVVS  1020
AAPSVKPIDL AADHATATQT SDNTQVAHSS GWPAIVADPD ECDESVSDLL AEVEAMEQNG  1080
LPSSPTSTFH YDDDDLTKGP EKDFFNPVAR MSLTPESCRM NTSQPSILDN VSTGKSSMGT  1140
ESKDNTLFNH CGTAGPELLL FAPPAPSSVS QDLTLTTTAL RLGSETTVKA GSVERLPKSL  1200
SGVSLEPSPR SSSLHDSPRG NTERSPRGNG SHQRRSGGHS RDRQWWNNGH NTSVNNNSHN  1260
NRQWPNSSRH GYDHGSGSYT AHPPKGLKIC KFYESGNCKK GASCSFWHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2naa_A4e-14135207473Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific
4gnd_A6e-141372061581Histone-lysine N-methyltransferase NSD3
4gnd_C6e-141372061581Histone-lysine N-methyltransferase NSD3
4gne_A6e-141372061581Histone-lysine N-methyltransferase NSD3
4gnf_A6e-141372061581Histone-lysine N-methyltransferase NSD3
4gng_A6e-141372061581Histone-lysine N-methyltransferase NSD3
4gng_D6e-141372061581Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013598038.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896270.0AC189627.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS001M03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013598038.10.0PREDICTED: zinc finger CCCH domain-containing protein 44 isoform X1
SwissprotQ9SD340.0C3H44_ARATH; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A0D3DDX70.0A0A0D3DDX7_BRAOL; Uncharacterized protein
STRINGBo7g100770.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77872130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.10.0DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding