PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013598021.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family BBR-BPC
Protein Properties Length: 269aa    MW: 30443.6 Da    PI: 9.4544
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013598021.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind3052.7e-93926915301
       GAGA_bind  15 epaaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksid 109
                     e++++l   +++++ms++aerda+++ern al++k++a+a+rd+a++qrd a++er++a++er+n+l+al+++en l+  l  +        +  
  XP_013598021.1   9 EQHNALV--MNKKIMSILAERDAAVKERNEALAAKQEALAARDEALQQRDLAISERDNAIMERENALTALQHRENHLNYILDCA--------KRG 93 
                     4556677..99*************************************************************999755433222........111 PP

       GAGA_bind 110 slqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslD 204
                       q+         ++ ++e++  +  p+++ ++e  ++k+kk     +k+ + ++k+kk  +e+ +++ ++++  ++ ++++++ d++ln v++D
  XP_013598021.1  94 GYQT---------CF-TEETHLPNPSPLSTIPHEPPNTKTKK----DRKQETARSKRKKSGGEDLNRQLASPG--KKCRKDWDCNDVGLNLVTFD 172
                     1222.........11.23334444455555554444444444....222334455566666778899999999..579***************** PP

       GAGA_bind 205 estlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvt 299
                     e+t+PvP+C+CtG+ rqCYkWGnGGWqS+CCttt+S+yPLP+++++r++Ri+grKmS+++f++lL++La+eG+dls pvDLkd+WA+HGtn+++ 
  XP_013598021.1 173 ETTMPVPMCTCTGTARQCYKWGNGGWQSSCCTTTLSQYPLPQMPNKRHSRIGGRKMSGNVFSRLLSRLAGEGHDLSSPVDLKDYWARHGTNRYII 267
                     **********************************************************************************************9 PP

       GAGA_bind 300 ir 301
                     i+
  XP_013598021.1 268 IK 269
                     98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012263.0E-1311269IPR010409GAGA-binding transcriptional activator
PfamPF062175.3E-918269IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MMPQHQIKEQ HNALVMNKKI MSILAERDAA VKERNEALAA KQEALAARDE ALQQRDLAIS  60
ERDNAIMERE NALTALQHRE NHLNYILDCA KRGGYQTCFT EETHLPNPSP LSTIPHEPPN  120
TKTKKDRKQE TARSKRKKSG GEDLNRQLAS PGKKCRKDWD CNDVGLNLVT FDETTMPVPM  180
CTCTGTARQC YKWGNGGWQS SCCTTTLSQY PLPQMPNKRH SRIGGRKMSG NVFSRLLSRL  240
AGEGHDLSSP VDLKDYWARH GTNRYIIIK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. {ECO:0000269|PubMed:14731261}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00480DAPTransfer from AT4G38910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013598021.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013598019.10.0PREDICTED: protein BASIC PENTACYSTEINE5-like isoform X1
RefseqXP_013598020.10.0PREDICTED: protein BASIC PENTACYSTEINE5-like isoform X2
RefseqXP_013598021.10.0PREDICTED: protein BASIC PENTACYSTEINE5-like isoform X2
RefseqXP_013706798.10.0protein BASIC PENTACYSTEINE5 isoform X1
RefseqXP_013706799.10.0protein BASIC PENTACYSTEINE5 isoform X2
RefseqXP_013706800.10.0protein BASIC PENTACYSTEINE5 isoform X2
SwissprotF4JUI31e-155BPC5_ARATH; Protein BASIC PENTACYSTEINE5
TrEMBLA0A0D3DIF60.0A0A0D3DIF6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6F1T20.0A0A3P6F1T2_BRAOL; Uncharacterized protein
STRINGBo7g119540.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38910.11e-146basic pentacysteine 5