PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013598019.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family BBR-BPC
Protein Properties Length: 282aa    MW: 31857.1 Da    PI: 8.8398
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013598019.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind304.73.3e-932228215301
       GAGA_bind  15 epaaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksid 109
                     e++++l   +++++ms++aerda+++ern al++k++a+a+rd+a++qrd a++er++a++er+n+l+al+++en l+  l  +        +  
  XP_013598019.1  22 EQHNALV--MNKKIMSILAERDAAVKERNEALAAKQEALAARDEALQQRDLAISERDNAIMERENALTALQHRENHLNYILDCA--------KRG 106
                     4557777..99*************************************************************999755433222........111 PP

       GAGA_bind 110 slqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslD 204
                       q+         ++ ++e++  +  p+++ ++e  ++k+kk     +k+ + ++k+kk  +e+ +++ ++++  ++ ++++++ d++ln v++D
  XP_013598019.1 107 GYQT---------CF-TEETHLPNPSPLSTIPHEPPNTKTKK----DRKQETARSKRKKSGGEDLNRQLASPG--KKCRKDWDCNDVGLNLVTFD 185
                     1222.........11.23334444455555554444444444....222334455566666778899999999..579***************** PP

       GAGA_bind 205 estlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvt 299
                     e+t+PvP+C+CtG+ rqCYkWGnGGWqS+CCttt+S+yPLP+++++r++Ri+grKmS+++f++lL++La+eG+dls pvDLkd+WA+HGtn+++ 
  XP_013598019.1 186 ETTMPVPMCTCTGTARQCYKWGNGGWQSSCCTTTLSQYPLPQMPNKRHSRIGGRKMSGNVFSRLLSRLAGEGHDLSSPVDLKDYWARHGTNRYII 280
                     **********************************************************************************************9 PP

       GAGA_bind 300 ir 301
                     i+
  XP_013598019.1 281 IK 282
                     98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.4E-1351282IPR010409GAGA-binding transcriptional activator
PfamPF062174.3E-9120282IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MSEDFLELSC SGNMMPQHQI KEQHNALVMN KKIMSILAER DAAVKERNEA LAAKQEALAA  60
RDEALQQRDL AISERDNAIM ERENALTALQ HRENHLNYIL DCAKRGGYQT CFTEETHLPN  120
PSPLSTIPHE PPNTKTKKDR KQETARSKRK KSGGEDLNRQ LASPGKKCRK DWDCNDVGLN  180
LVTFDETTMP VPMCTCTGTA RQCYKWGNGG WQSSCCTTTL SQYPLPQMPN KRHSRIGGRK  240
MSGNVFSRLL SRLAGEGHDL SSPVDLKDYW ARHGTNRYII IK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. {ECO:0000269|PubMed:14731261}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00480DAPTransfer from AT4G38910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013598019.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013598019.10.0PREDICTED: protein BASIC PENTACYSTEINE5-like isoform X1
RefseqXP_013706798.10.0protein BASIC PENTACYSTEINE5 isoform X1
SwissprotF4JUI31e-156BPC5_ARATH; Protein BASIC PENTACYSTEINE5
TrEMBLA0A0D3DIF60.0A0A0D3DIF6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6F1T20.0A0A3P6F1T2_BRAOL; Uncharacterized protein
STRINGBo7g119540.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40902659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38910.21e-148basic pentacysteine 5