PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013598002.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 418aa    MW: 46265.4 Da    PI: 6.1956
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013598002.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.61.8e-073563882254
                     SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      +yp++e++++L +++gL+ +q+ +WF N+R +
  XP_013598002.1 356 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 388
                     58*****************************87 PP
2ELK301.1e-10309330122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELKh+L+++Y+++++++++E++
  XP_013598002.1 309 ELKHELKQGYKEKIVDIREEIM 330
                     9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.8E-19143187IPR005540KNOX1
PfamPF037904.1E-17146186IPR005540KNOX1
SMARTSM012569.9E-29200255IPR005541KNOX2
PfamPF037915.0E-21205254IPR005541KNOX2
PfamPF037893.8E-7309330IPR005539ELK domain
SMARTSM011881.8E-4309330IPR005539ELK domain
PROSITE profilePS512139.969309329IPR005539ELK domain
PROSITE profilePS5007111.677329392IPR001356Homeobox domain
SMARTSM003891.5E-10331396IPR001356Homeobox domain
SuperFamilySSF466897.27E-16331395IPR009057Homeodomain-like
CDDcd000863.95E-11332393No hitNo description
Gene3DG3DSA:1.10.10.601.3E-24336393IPR009057Homeodomain-like
PfamPF059201.2E-17349388IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MAFHQNHLSQ DLSFNHFTDQ HQPPPPPPPP QQQQHFQDSA PPNWLNTALL RSDNNFLNLH  60
TTAANATAAS SSDSPSSAAA VAANQWLSRS SSFLQRTANN NNAAVVGDVI DDVTGGGAEQ  120
MMSGGENKND GGGGEGVVSW QNARHKSEIL SHPLYEQLLS AHVACLRIAT PVDQLPRIDA  180
QLAQSQHVVA KYSTLCGGGQ GLVGGDDKEL DQFMTHYVLL LCSFKEQLQQ HVRVHAMEAV  240
MACWEIEQSL QSLTGVSPGE GMGATMSDDE DEQVESDANM FDGGLDVLGF GPLIPTESER  300
SLMERVRQEL KHELKQGYKE KIVDIREEIM RKRRAGKLPG DTTSVLKGWW QSHSKWPYPT  360
EEDKARLVQE TGLQLKQINN WFINQRKRNW HSNPSSSTVL KNKRKSNAGD NSGRERFT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A3e-12332396872Homeobox protein PKNOX1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013598002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529660.0AK352966.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-12-H10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013598002.10.0PREDICTED: homeobox protein knotted-1-like 3
RefseqXP_013706486.10.0homeobox protein knotted-1-like 3 isoform X1
SwissprotP480000.0KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A0D3DCW50.0A0A0D3DCW5_BRAOL; Uncharacterized protein
TrEMBLA0A3P6ESQ10.0A0A3P6ESQ1_BRAOL; Uncharacterized protein
STRINGBo7g096160.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.10.0KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]