PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013597964.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 365aa    MW: 41615.4 Da    PI: 4.0443
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013597964.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM32.32.8e-10211399127
             NAM   9 PtdeelvveyLkkkvegkk..leleevikevd...iykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                     P+  e++   Lk+ +++++  + + +v+++ d    ++++ w+  +  +  e++ w+f ++++ ++ +++  +r  + g+Wka g++++++  + 
  XP_013597964.1  21 PKSPEVI-LLLKRFIRKEEmpHCAVKVLADSDlqvTVSTNAWTAAAYPYFeEDEYWFFLHRKQASKDKKNVDRRLGDLGTWKARGRSTNIYI-GA 113
                     6677777.667777777774322234566666222244566666533333145566666666666666777777999***************.99 PP

             NAM  98 elvglkktLvfykgrapkgektdWvmheyr 127
                     +lvg+k+   + kg+    +kt W+  ey+
  XP_013597964.1 114 QLVGIKQKYELIKGK----VKTGWFQFEYT 139
                     ***********9654....57899999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100511.33213156IPR003441NAC domain
PfamPF023651.1E-424139IPR003441NAC domain
SuperFamilySSF1019413.4E-1056144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MAAPNPANMA AAPNPPLDLP PKSPEVILLL KRFIRKEEMP HCAVKVLADS DLQVTVSTNA  60
WTAAAYPYFE EDEYWFFLHR KQASKDKKNV DRRLGDLGTW KARGRSTNIY IGAQLVGIKQ  120
KYELIKGKVK TGWFQFEYTR FSNKFEKICV AHLIFAKKPE VDYPSDISDE EEEEEEEEEE  180
EESADEEEQG LQVQAHEVEL VNEQQSLHEQ VLNLEEEEAA ASDEVEQTLV NEEQRLQQVQ  240
AHEVELGNEH QGLQEQVVNF AHEEALTFVN GQQGHFLDDD EEWARFLNTD DDGLAIDDLF  300
EDGDSEKTLE HVNEQQSLQD QVLNLEEEAA AADDDEEEQT HVNEVEQQGG LQVHAHEGEL  360
GRSSC
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013597964.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013597963.10.0PREDICTED: major centromere autoantigen B-like
RefseqXP_013597964.10.0PREDICTED: major centromere autoantigen B-like
RefseqXP_013597965.10.0PREDICTED: major centromere autoantigen B-like
RefseqXP_013597966.10.0PREDICTED: major centromere autoantigen B-like
RefseqXP_013597967.10.0PREDICTED: major centromere autoantigen B-like
RefseqXP_013597968.10.0PREDICTED: major centromere autoantigen B-like
RefseqXP_013597969.10.0PREDICTED: major centromere autoantigen B-like
RefseqXP_013597971.10.0PREDICTED: major centromere autoantigen B-like
TrEMBLA0A3P6EXU00.0A0A3P6EXU0_BRAOL; Uncharacterized protein (Fragment)
STRINGBra015108.1-P1e-171(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.23e-07NAC family protein