PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013597849.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HB-other

Protein Properties

Length: 1664aa MW: 186842 Da PI: 4.9617

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013597849.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.8	3.9e-18	22	78	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++kR t+ qle+Le+ ++ ++yps++ r++L+ +l+L++rq ++WF+ rR k++k XP_013597849.1 22 KSKRKMKTAAQLEVLENTYKAEPYPSEALRADLSVQLNLSDRQLQMWFCHRRLKDRK 78 679****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-17	4	78	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.48E-15	15	79	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.601	19	79	IPR001356	Homeobox domain
SMART	SM00389	3.3E-16	21	83	IPR001356	Homeobox domain
CDD	cd00086	1.03E-13	22	80	No hit	No description
Pfam	PF00046	9.7E-16	22	78	IPR001356	Homeobox domain
SMART	SM00571	3.7E-23	533	592	IPR018501	DDT domain
PROSITE profile	PS50827	16.574	533	592	IPR018501	DDT domain
Pfam	PF02791	1.5E-16	534	589	IPR018501	DDT domain
Pfam	PF05066	1.8E-15	715	782	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.1E-6	912	950	IPR028942	WHIM1 domain
Pfam	PF15613	4.1E-11	1072	1144	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1664 aa Download sequence Send to blast
MEDGSEGDKN KTPEGAAATE SKSKRKMKTA AQLEVLENTY KAEPYPSEAL RADLSVQLNL 60 SDRQLQMWFC HRRLKDRKSS TPTKRQRKES TPSAAESSKQ AAAVNAADLV AGNEHNSFPH 120 ELDSRRTARG GGGVTVVRRF NEPSPSEVRA IGYVEAQLGE RLREDGPILG MEFDPLPPGA 180 FGTPIEMPTH RKAATRPAFE TNLYVRSDVK PLKESVRTIR EYQFLPEQPS SRTDHSERAS 240 PASHHYGVPL DASVVMRASS VSGGHRDDYK VSPQIPNLNL SAHHVKPGHV LGEYDSPYQK 300 SYVDPALHGN KDPFVKSERE VGIDDDEDDG DGDDDDDDVL LQLERKRKSE EARIAREVEA 360 HEKRIRKELE RQDMLRRKRE EQVRKEMERQ DRERRKEEER LLRERQREEE RYLKEQMKEM 420 QRREKFLKKE TIRAEKMRQK EEMRRVKEIA RLKAANERAM ARKIAKESME LIEDERLELM 480 EVAALSLGLP SMIALDFETL QNLDAYRDKQ VTFPPTSVDL KKPFAVKPWN GSDENIANLL 540 MVWRFLINFA DVLGLWPFTL DEFTQAFHDH DPRLMGEIHI VLLKTIIKDI EGVARTLSVG 600 VGANQNAAAN PGGGHPHVVE GAYAWGFDIR SWRKNLNVFT WPEILRQLAL SAGFGPELKK 660 QDIKTMSVHD ENEANNSENV IFNLRIGAAA ENAFAKMQEK GLSNPRRSRH RLTPGTVKFA 720 AFHVLSIEGE KGLTILEVAE KIQKSGLRDL TTSRTPEASV AAALSRDTKL FERVAPSTYC 780 VRPSYRKDAG DAETIFAEAR ERIRMFKSGV TDVEDVDEAE REEDSESDVG DDPEVDLNLK 840 KEDLGALEEI GKLTGVEPSL ENGKLETEPE ANPLTPSLPE ESTKDEKIDD ILPDQQDAVA 900 NDGDCFDVSK LGEQWVQGLV EGDYSSLSIE ERLSALVALI GIAIEGNTIR ISLEERLEVA 960 SALKKQMWSE VQLDKRWKEE SLIRANYLSY PTPKIQESPS ADVTPISSQD PLSLPQIDVA 1020 GPSLQSQENV AGMENLQYHH QQQQSYTADR ERLRAELKAY VGYKAEELYV YRSLPLGLDR 1080 RRNRYWRFSA SASRNDPGCG RIFVELQDGR WRLIDSEVGF DCLVKSLDVR GVRESHLHFM 1140 LLKMEASFKE AVRRNVETST GLDLDSDTAD ILSTFKIELG DGERCGVLQR FQSFERWMWD 1200 NMLHPGALSA LKYGAKKSTT LFHICRSCGE LHFAVDVCCP GCGQVMMSGG LDVNELCFAD 1260 QVARLGEDTG FILRGSHLSP LRIRLLKIQL ALVEASLPPE GLQTHWTESL RKTWGLKLLL 1320 SSSPEELHQV LTMLEVALKR DFLSSNFETT CELLDLSEEA LLRDVKVLPW TPKTTGGVAL 1380 RLFELDSSIA YTPDQNKDPQ KDKESEDFVG LETNFLRNVQ ETDVIEATPV QVAYAQEDTE 1440 PGLGRGRPPR GRGRPRSQRG KKPSPASGKP PRGAANSNGE PMLRPRAQPR GGRKKGRRSS 1500 GTRTRPTKGT LGISNEVVGV GGGGGGGGRR GKEVNVNAKT NLHGWVETPD DDGEASSSGR 1560 SFQYDDDVMA PVDDFGESSK LVGRGEFSLH SDDEYEEEEE EEEEEDMDTK MNVDDEDEDY 1620 INEEDSDGGR EQASEMISME AAASQRRFPF EDPDLTSSSS SDFQ

Sequence ? help Back to Top

Protein Sequence Length: 1664 aa Download sequence Send to blast

MEDGSEGDKN KTPEGAAATE SKSKRKMKTA AQLEVLENTY KAEPYPSEAL RADLSVQLNL  60
SDRQLQMWFC HRRLKDRKSS TPTKRQRKES TPSAAESSKQ AAAVNAADLV AGNEHNSFPH  120
ELDSRRTARG GGGVTVVRRF NEPSPSEVRA IGYVEAQLGE RLREDGPILG MEFDPLPPGA  180
FGTPIEMPTH RKAATRPAFE TNLYVRSDVK PLKESVRTIR EYQFLPEQPS SRTDHSERAS  240
PASHHYGVPL DASVVMRASS VSGGHRDDYK VSPQIPNLNL SAHHVKPGHV LGEYDSPYQK  300
SYVDPALHGN KDPFVKSERE VGIDDDEDDG DGDDDDDDVL LQLERKRKSE EARIAREVEA  360
HEKRIRKELE RQDMLRRKRE EQVRKEMERQ DRERRKEEER LLRERQREEE RYLKEQMKEM  420
QRREKFLKKE TIRAEKMRQK EEMRRVKEIA RLKAANERAM ARKIAKESME LIEDERLELM  480
EVAALSLGLP SMIALDFETL QNLDAYRDKQ VTFPPTSVDL KKPFAVKPWN GSDENIANLL  540
MVWRFLINFA DVLGLWPFTL DEFTQAFHDH DPRLMGEIHI VLLKTIIKDI EGVARTLSVG  600
VGANQNAAAN PGGGHPHVVE GAYAWGFDIR SWRKNLNVFT WPEILRQLAL SAGFGPELKK  660
QDIKTMSVHD ENEANNSENV IFNLRIGAAA ENAFAKMQEK GLSNPRRSRH RLTPGTVKFA  720
AFHVLSIEGE KGLTILEVAE KIQKSGLRDL TTSRTPEASV AAALSRDTKL FERVAPSTYC  780
VRPSYRKDAG DAETIFAEAR ERIRMFKSGV TDVEDVDEAE REEDSESDVG DDPEVDLNLK  840
KEDLGALEEI GKLTGVEPSL ENGKLETEPE ANPLTPSLPE ESTKDEKIDD ILPDQQDAVA  900
NDGDCFDVSK LGEQWVQGLV EGDYSSLSIE ERLSALVALI GIAIEGNTIR ISLEERLEVA  960
SALKKQMWSE VQLDKRWKEE SLIRANYLSY PTPKIQESPS ADVTPISSQD PLSLPQIDVA  1020
GPSLQSQENV AGMENLQYHH QQQQSYTADR ERLRAELKAY VGYKAEELYV YRSLPLGLDR  1080
RRNRYWRFSA SASRNDPGCG RIFVELQDGR WRLIDSEVGF DCLVKSLDVR GVRESHLHFM  1140
LLKMEASFKE AVRRNVETST GLDLDSDTAD ILSTFKIELG DGERCGVLQR FQSFERWMWD  1200
NMLHPGALSA LKYGAKKSTT LFHICRSCGE LHFAVDVCCP GCGQVMMSGG LDVNELCFAD  1260
QVARLGEDTG FILRGSHLSP LRIRLLKIQL ALVEASLPPE GLQTHWTESL RKTWGLKLLL  1320
SSSPEELHQV LTMLEVALKR DFLSSNFETT CELLDLSEEA LLRDVKVLPW TPKTTGGVAL  1380
RLFELDSSIA YTPDQNKDPQ KDKESEDFVG LETNFLRNVQ ETDVIEATPV QVAYAQEDTE  1440
PGLGRGRPPR GRGRPRSQRG KKPSPASGKP PRGAANSNGE PMLRPRAQPR GGRKKGRRSS  1500
GTRTRPTKGT LGISNEVVGV GGGGGGGGRR GKEVNVNAKT NLHGWVETPD DDGEASSSGR  1560
SFQYDDDVMA PVDDFGESSK LVGRGEFSLH SDDEYEEEEE EEEEEDMDTK MNVDDEDEDY  1620
INEEDSDGGR EQASEMISME AAASQRRFPF EDPDLTSSSS SDFQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269\|PubMed:22694359}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013597849.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013597849.1	0.0	PREDICTED: uncharacterized protein LOC106305959
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A0D3D8V3	0.0	A0A0D3D8V3_BRAOL; Uncharacterized protein
STRING	Bo7g067190.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9601	25	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator