PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013597848.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 231aa MW: 24893.8 Da PI: 10.337

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013597848.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124.4	1.2e-38	32	193	2	110
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........ 88 a+kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++a++ ss++ + s++ XP_013597848.1 32 AVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTAVRGSSTTISTSANctlsssld 126 789*************************************************************9999999977777766665555567777788 PP TCP 89 ...............................................kaaksaakskksqksaasalnl 110 + ++ ++++q++++++++ XP_013597848.1 127 hkpfilgkrlredsgggkeemgsfatpagfwavparpdfgqvwsfasH--QEMFLQQQQQQQQQQQQAA 193 888889999999999999999999999999999999999999997532..2222233333332222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	8.7E-34	38	193	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.892	38	92	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MSNNNNDGVM ISNGSLIEHQ QNQKQSSHGA LAVKKPPAKD RHSKVDGRGR RIRMPIICAA 60 RVFQLTRELG HKSDGQTIEW LLRQAEPSII AATGTGTTPA SFSTAVRGSS TTISTSANCT 120 LSSSLDHKPF ILGKRLREDS GGGKEEMGSF ATPAGFWAVP ARPDFGQVWS FASHQEMFLQ 180 QQQQQQQQQQ QAAMGEASAA RVGNYLPGHL NLLASLSGGA PGSGRREDDQ R

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013597848.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013597848.1	1e-171	PREDICTED: transcription factor TCP7-like isoform X2
Swissprot	Q9FMX2	1e-100	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A0D3DDC8	1e-156	A0A0D3DDC8_BRAOL; Uncharacterized protein
STRING	Bo7g097790.1	1e-157	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	2e-73	TCP family protein