PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013597847.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TCP | ||||||||
Protein Properties | Length: 241aa MW: 25957 Da PI: 10.337 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 128.3 | 7.6e-40 | 32 | 205 | 2 | 121 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........ 88 a+kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++a++ ss++ + s++ XP_013597847.1 32 AVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTAVRGSSTTISTSANctlsssld 126 789****************************************************************9999977777777665555577778888 PP TCP 89 ..............................................kaaksaakskksqksaasalnlakesrakarar 121 ++++ +++++q+++a+al ++++++++a + XP_013597847.1 127 hkpfilgkrlredsgggkeemgsfatpagfwavparpdfgqvwsfaSHQEMFLQQQQQQQQPAAALFVHQQQQQQAAMG 205 9999999999999999****************************96444444477777777777777777766666544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.2E-33 | 38 | 196 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.892 | 38 | 92 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MSNNNNDGVM ISNGSLIEHQ QNQKQSSHGA LAVKKPPAKD RHSKVDGRGR RIRMPIICAA 60 RVFQLTRELG HKSDGQTIEW LLRQAEPSII AATGTGTTPA SFSTAVRGSS TTISTSANCT 120 LSSSLDHKPF ILGKRLREDS GGGKEEMGSF ATPAGFWAVP ARPDFGQVWS FASHQEMFLQ 180 QQQQQQQPAA ALFVHQQQQQ QAAMGEASAA RVGNYLPGHL NLLASLSGGA PGSGRREDDQ 240 R |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00524 | DAP | Transfer from AT5G23280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013597847.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013597847.1 | 1e-179 | PREDICTED: transcription factor TCP7-like isoform X1 | ||||
Swissprot | Q9FMX2 | 1e-105 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A0D3DDC8 | 1e-177 | A0A0D3DDC8_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g097790.1 | 1e-178 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1782 | 26 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 2e-66 | TCP family protein |