PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013597837.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Nin-like
Protein Properties Length: 899aa    MW: 99710.7 Da    PI: 4.7631
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013597837.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK887.9e-28613663252
          RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                     ek+i l++l++yF++++kdAAk++gvc+T+LKriCR++GI RWP+Rkik++
  XP_013597837.1 613 EKTIGLDVLRQYFAGSLKDAAKSIGVCPTTLKRICRHHGITRWPSRKIKKV 663
                     799**********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.836602683IPR003035RWP-RK domain
PfamPF020426.7E-24616663IPR003035RWP-RK domain
SuperFamilySSF542777.85E-24791886No hitNo description
Gene3DG3DSA:3.10.20.2401.3E-23799882No hitNo description
SMARTSM006661.8E-26801884IPR000270PB1 domain
PROSITE profilePS5174526.329801884IPR000270PB1 domain
PfamPF005645.8E-16802883IPR000270PB1 domain
CDDcd064071.35E-43802883No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 899 aa     Download sequence    Send to blast
MGLDMEDDGG SDGGEGNGGF SPNSSFGAFP ETAMDLDFMD ELLFDGCWLE TTDSKSLKET  60
EEGASDSTAM NANSPFLCFG ENPSQDNFSN EETERMNQEG LDQAEKFLLD EAEVGRSWWI  120
APRTREDPSS SVKERLLRAI SGLEEAVPDK DFLVQIWVPF QQEGKNFLTT LAQPHLFNQK  180
YTSLAKYRHV SENYNFPADE GSTEGGLPGR VFLQKFPEWT PDVRFFRSDE YPRIKEAQKC  240
DVRGSLALPV FERCSGTCLG VVEVVTTTQK MNYRPELENI CKALEAVDLR SSSNLKPPSN  300
ESLQVYNDFY YAALPEISDF LASVCRRYVL PLALSWAPCA QQGKGGSRHS DKNFSQCVST  360
IDSACFVLDE ESKYFLEACS EHHLLQGEGI VGKAFKATKL CFVPEVITFS KTNYPLAHHA  420
KISGLHAALA VPLKSKSNGL VDFVLEFFFP KGCLDTEAKQ EMLKSLSVTL QQDFRSSNLV  480
IDKDLELEVV LPVREDMVLL ENPLTGAETA EALREIHLLQ ESSWISHMIK ANEKGKDVSL  540
SWEYQNEDPK DEFKLSPGWN NSQLDPAPNN IPSEAEQFQQ GSTSGLRVDA GPSTESASTG  600
GRRPGEKRRT KTEKTIGLDV LRQYFAGSLK DAAKSIGVCP TTLKRICRHH GITRWPSRKI  660
KKVGHSLKKL QLVMDSVQGA QGSIPLDSFY TSFPELSSPN ISSNESSLKN NEQLHHLSVP  720
IENGGVAEDK PAQMSPSSSG SGSNTNTPNA NGVLKEAQNE VELQNGNQEE TKCLARTQSH  780
NIFKEPPLPG SSKMSLRDGG GIKVKATFGE AIIRFTLLPS WGYRELQQEI ARRFNIVDVS  840
WFDLKYLDDD EEWVLLTCEA DLEECIDIYR SSQSQTIKIS LHDPFQVKLG GSFGSSGPS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013597837.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013597834.10.0PREDICTED: protein NLP1 isoform X1
RefseqXP_013597835.10.0PREDICTED: protein NLP1 isoform X1
RefseqXP_013597836.10.0PREDICTED: protein NLP1 isoform X1
RefseqXP_013597837.10.0PREDICTED: protein NLP1 isoform X1
SwissprotQ8H1110.0NLP1_ARATH; Protein NLP1
TrEMBLA0A0D3D3J20.0A0A0D3D3J2_BRAOL; Uncharacterized protein
STRINGBo7g014920.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17150.10.0Nin-like family protein
Publications ? help Back to Top
  1. Suzuki W,Konishi M,Yanagisawa S
    The evolutionary events necessary for the emergence of symbiotic nitrogen fixation in legumes may involve a loss of nitrate responsiveness of the NIN transcription factor.
    Plant Signal Behav, 2014.
    [PMID:24270631]