PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013597797.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family FAR1
Protein Properties Length: 720aa    MW: 83395.7 Da    PI: 5.5934
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013597797.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR185.39.6e-2732131190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                     +fY+eYAk++GF++ +++s++s+++g++++++fvC+++g++++++++          ++ +r ++++++t+Cka+l+vkk++dg+w++  l++eH
  XP_013597797.1  32 EFYKEYAKSIGFNTIIKASRRSRMSGKFIDAKFVCTRYGTKKTDEEEeedinipqarKRGRRINHSSSKTDCKACLHVKKRQDGRWVIRALVKEH 126
                     6****************************************99999999****9986666667999***************************** PP

            FAR1  86 nHela 90 
                     nHe +
  XP_013597797.1 127 NHETF 131
                     **976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.7E-2432131IPR004330FAR1 DNA binding domain
PfamPF105518.3E-21208300IPR018289MULE transposase domain
PROSITE profilePS5096610.014480516IPR007527Zinc finger, SWIM-type
SMARTSM005756.9E-6491518IPR006564Zinc finger, PMZ-type
PfamPF044349.6E-6493514IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MEIDLEMSSE ECDDDQRINK GLEFESKEEA FEFYKEYAKS IGFNTIIKAS RRSRMSGKFI  60
DAKFVCTRYG TKKTDEEEEE DINIPQARKR GRRINHSSSK TDCKACLHVK KRQDGRWVIR  120
ALVKEHNHET FPPGQVSSIR DSYGREREMK KSRKFQALEG GDVERLLSFF TDMQAENPFF  180
FYSVDQCLRS VFWVDAKGRL DYACFSDVVS VDTTFVKNEY KLPLVAFIGV NHHGQFLLLG  240
CGLLLDDEST KSGFVWLFGA WLKAMNGRQP RVILTKHDQT LKEAVSEALP ASRHCFNTWD  300
TLGQMSEKVG QGFVDEINEV IYGSCKGDEF EERWCEVVDR FDVRDNVWIQ SLYEDREHWV  360
PVYMQDVSLA GMCSADSVLD KYIQRKTTLR AFLDQYKRMV QERVEEEEKA EIETLCKQPG  420
LKSPSPFGKQ MAELYTREMF KRFQVEVLGG VACHPKIESD DGNNKKMTFR VQDYEQNRGF  480
VVVWRSESSE VVCSCRLFEF KGFLCRHAMI VLQMSGELSV PSRYVLNRWR KDARRREAVV  540
SDLIGGGSSK AQRYTDLCLR SLKLSEEASL SEESYNTVMN VLNEAFRKCE ITSNVIHSVE  600
ESDSDAAHEE HNNNNSFNEN VADTGQEHSL QEAWKETDLQ EQRHRYSILD DYLSAQQVSH  660
EMGQISMMAS NRNGYSTSHQ NIHSLGQSIT QQRLYETDQL SFRPDQVMYE RLQDMVKDLN
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013597797.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013597797.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 1 isoform X2
RefseqXP_013660908.10.0protein FAR1-RELATED SEQUENCE 1-like
SwissprotQ5UBY20.0FRS1_ARATH; Protein FAR1-RELATED SEQUENCE 1
TrEMBLA0A0D3A4J20.0A0A0D3A4J2_BRAOL; Uncharacterized protein
STRINGBo1g022120.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19990.20.0FAR1-related sequence 1