PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013597765.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 283aa MW: 31081.6 Da PI: 7.5386

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013597765.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	96.5	2e-30	33	87	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlr t eLHerFv+av+qLGG++kAtP+ti+++m+vkgLtl+h+kSHLQk+Rl XP_013597765.1 33 KPRLRXTAELHERFVDAVSQLGGPDKATPRTIMRTMGVKGLTLYHLKSHLQKFRL 87 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.9E-28	30	89	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.209	30	90	IPR017930	Myb domain
SuperFamily	SSF46689	2.69E-13	32	88	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.7E-20	33	88	IPR006447	Myb domain, plants
Pfam	PF14379	1.2E-25	133	179	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MYSLPLDGGE YHGPLDGTDL PGDACLVLTT DPKPRLRXTA ELHERFVDAV SQLGGPDKAT 60 PRTIMRTMGV KGLTLYHLKS HLQKFRLGRQ ACKESTTDNS KDASCVGESX QDTGSSSSSS 120 LRMAAQEQNE GYQVTEALRA QMEVQRRLHK QLEVQRRLQL RIEAQGKYLQ SILEKACKAF 180 DEQAATFAGL EAAREELSEL AIRVSNSTRV PFFDATKMMM MPSLSELSVA IDHKTNITTN 240 CSVESPLTSN TNGSSISAAS MKKRHRDMGL GYEAGWPNSS TIG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-16	33	89	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-16	33	89	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	7e-17	33	89	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-17	33	89	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-17	33	89	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-17	33	89	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-16	33	89	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-16	33	89	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-16	33	89	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-16	33	89	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-16	33	89	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-16	33	89	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013597765.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY050355	0.0	AY050355.1 Arabidopsis thaliana AT3g24120/MUJ8_3 mRNA, complete cds.
GenBank	AY088428	0.0	AY088428.1 Arabidopsis thaliana clone 6626 mRNA, complete sequence.
GenBank	AY094046	0.0	AY094046.1 Arabidopsis thaliana AT3g24120/MUJ8_3 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013597765.1	0.0	PREDICTED: LOW QUALITY PROTEIN: myb family transcription factor APL
Swissprot	Q94A57	1e-176	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A078G0E8	1e-179	A0A078G0E8_BRANA; BnaA01g23340D protein
TrEMBL	A0A398ASI2	1e-179	A0A398ASI2_BRACM; Uncharacterized protein
STRING	Bra028359.1-P	1e-179	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3515	25	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	1e-163	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]