PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013597557.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C3H

Protein Properties

Length: 1153aa MW: 129340 Da PI: 8.3369

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013597557.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	39.6	9.4e-13	43	108	33	99
-SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++ l+++de+g+ We+ + + + + y lt+GW+++vk+++L +gD+v ++++ +++ +l++++ r+ XP_013597557.1 43 EMILRVQDEEGKPWEFGF-LDVNIQFYQLTNGWSNYVKEKQLGVGDIVFLQRIFTDSSRLFIGFSRR 108 56799***********.79999*************************9988888899998887 PP
2	zf-CCCH	35.2	2.1e-11	955	981	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C ++++tG Ck+G+ CkF+H++ XP_013597557.1 955 PGEPECAYYMKTGGCKFGSDCKFHHPR 981 5799*********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd10017	7.14E-7	4	106	No hit	No description
Gene3D	G3DSA:2.40.330.10	4.4E-12	4	108	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.26E-9	5	101	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	0.0027	5	109	IPR003340	B3 DNA binding domain
Pfam	PF02362	9.3E-11	42	108	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.391	46	109	IPR003340	B3 DNA binding domain
SMART	SM00255	0.0018	141	279	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain
Pfam	PF01582	2.3E-15	144	263	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain
SuperFamily	SSF52200	7.32E-12	160	254	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain
Gene3D	G3DSA:3.40.50.10140	7.9E-5	191	252	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain
SuperFamily	SSF52540	3.24E-39	308	551	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF00931	2.2E-20	310	556	IPR002182	NB-ARC
Gene3D	G3DSA:3.40.50.300	2.6E-5	323	457	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PRINTS	PR00364	1.0E-22	325	340	No hit	No description
PRINTS	PR00364	1.0E-22	401	415	No hit	No description
PRINTS	PR00364	1.0E-22	492	506	No hit	No description
SuperFamily	SSF46785	8.7E-5	528	631	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF52058	1.13E-32	654	880	IPR032675	Leucine-rich repeat domain, L domain-like
Gene3D	G3DSA:3.80.10.10	3.0E-26	688	884	IPR032675	Leucine-rich repeat domain, L domain-like
Pfam	PF07725	6.7E-7	717	734	IPR011713	Leucine-rich repeat 3
PRINTS	PR00364	1.0E-22	804	820	No hit	No description
SMART	SM00356	1.8E-5	954	981	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.502	954	982	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.2E-9	956	981	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.44E-5	959	983	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.3E-4	960	982	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.69	998	1025	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.385	998	1026	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007165	Biological Process	signal transduction
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding
GO:0043531	Molecular Function	ADP binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1153 aa Download sequence Send to blast
MEILFEKYLT TADLSWLNIF LFGANEEVVE YFGLATVFAR GAEMILRVQD EEGKPWEFGF 60 LDVNIQFYQL TNGWSNYVKE KQLGVGDIVF LQRIFTDSSR LFIGFSRREA ALDGTSSDKL 120 KEVNSPLPLR SHVHSVTEFD PVLVFSCAAN QESGERYFIS YISTELCLRG FTPLIYDLTR 180 GTLTGCLELP HRSRVGIIIF SNNYASSRQC QDNFVAIMDH SKANSLVLLP VFFKVKVTDI 240 RGQSGSFGRA FSQLENSIQA SQVPTFTFID KHQYMKGGEV ILAKNIVSNV CLLLSSENNM 300 KLRGRLQMNS VLSLLYCSQS SAPHIVGLWG MAGIGKTTIA REIFRTQADR YDVCYFLPDF 360 HIACQMRGLS HLRDEFFSKI YGEEKVTVDA CDTKLSFLRD RFLSKKVLVV LDGVSSARDA 420 EFLVGGFGWF SGGHTLILTS RNRQVLIQCT AKEIYEIQKL SEHESLHVCS QFAAVQNWKE 480 RTSLVSELVN YASGIPLALR ALGSSLQNNC IVGEKQHLKT LRQHPLVEIQ DAFKRSFDVL 540 DGNEKHIFLD LACFFRGENK DYVVSILDAC GFFTDLGIYG LIDESLISLV GNRIEMPNIF 600 QDTGRFVVCQ ENNETGKRSR LLDPTDIVDV LTNNSGTEAI EGIFLDASGL TFELSTTAFE 660 KMYRLRLLKL YCPTSENHCK VSLPQGLYSL PDELRLLHWE RYPLGSLPRN FNPKNIVELN 720 MPYSNMTRLW KGTKNLERLK RIILSHSRQL TKFPRLSKAK NLELIDLEGC TSLVKVNSSI 780 LHHQKLTFLS LKDCSRLRSM PATVHLEALK VLNLSGCSEL EDLQDFSPNL SELYLAGTAI 840 TEIPSSIGGL TRLVTLDLEN CNRLQHLPPE ISNLKAVVSL SAKRPASSKE SRDLASFVDV 900 APPYRRYRLK RCIEAVILSL RKRKREKIFS IATNLSEVMR ASVSTWGFFG LPERPGEPEC 960 AYYMKTGGCK FGSDCKFHHP RHRETHIPGL SSFSHPLRPG NPVCASYYYT GNCSSGATCM 1020 FDHPSSIPTH RDTSFVASLT PNLNPRGFSS SIGDSSSELV EAATKKRRIH HNTSPMVSET 1080 PLLNLRGFVS SIGDASSKLV EAPTSKVRIA ARKKQRIHKN TTSMASETPH LNPPELSSSP 1140 GALSSEHVKQ NKD

Sequence ? help Back to Top

Protein Sequence Length: 1153 aa Download sequence Send to blast

MEILFEKYLT TADLSWLNIF LFGANEEVVE YFGLATVFAR GAEMILRVQD EEGKPWEFGF  60
LDVNIQFYQL TNGWSNYVKE KQLGVGDIVF LQRIFTDSSR LFIGFSRREA ALDGTSSDKL  120
KEVNSPLPLR SHVHSVTEFD PVLVFSCAAN QESGERYFIS YISTELCLRG FTPLIYDLTR  180
GTLTGCLELP HRSRVGIIIF SNNYASSRQC QDNFVAIMDH SKANSLVLLP VFFKVKVTDI  240
RGQSGSFGRA FSQLENSIQA SQVPTFTFID KHQYMKGGEV ILAKNIVSNV CLLLSSENNM  300
KLRGRLQMNS VLSLLYCSQS SAPHIVGLWG MAGIGKTTIA REIFRTQADR YDVCYFLPDF  360
HIACQMRGLS HLRDEFFSKI YGEEKVTVDA CDTKLSFLRD RFLSKKVLVV LDGVSSARDA  420
EFLVGGFGWF SGGHTLILTS RNRQVLIQCT AKEIYEIQKL SEHESLHVCS QFAAVQNWKE  480
RTSLVSELVN YASGIPLALR ALGSSLQNNC IVGEKQHLKT LRQHPLVEIQ DAFKRSFDVL  540
DGNEKHIFLD LACFFRGENK DYVVSILDAC GFFTDLGIYG LIDESLISLV GNRIEMPNIF  600
QDTGRFVVCQ ENNETGKRSR LLDPTDIVDV LTNNSGTEAI EGIFLDASGL TFELSTTAFE  660
KMYRLRLLKL YCPTSENHCK VSLPQGLYSL PDELRLLHWE RYPLGSLPRN FNPKNIVELN  720
MPYSNMTRLW KGTKNLERLK RIILSHSRQL TKFPRLSKAK NLELIDLEGC TSLVKVNSSI  780
LHHQKLTFLS LKDCSRLRSM PATVHLEALK VLNLSGCSEL EDLQDFSPNL SELYLAGTAI  840
TEIPSSIGGL TRLVTLDLEN CNRLQHLPPE ISNLKAVVSL SAKRPASSKE SRDLASFVDV  900
APPYRRYRLK RCIEAVILSL RKRKREKIFS IATNLSEVMR ASVSTWGFFG LPERPGEPEC  960
AYYMKTGGCK FGSDCKFHHP RHRETHIPGL SSFSHPLRPG NPVCASYYYT GNCSSGATCM  1020
FDHPSSIPTH RDTSFVASLT PNLNPRGFSS SIGDSSSELV EAATKKRRIH HNTSPMVSET  1080
PLLNLRGFVS SIGDASSKLV EAPTSKVRIA ARKKQRIHKN TTSMASETPH LNPPELSSSP  1140
GALSSEHVKQ NKD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	920	926	RKRKREK

Functional Description ? help Back to Top
Source	Description
UniProt	Disease resistance protein that cooperates with RPP2B to confer resistance to Hyaloperonospora parasitica isolate Cala2. {ECO:0000269\|PubMed:15165183}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013597557.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ842807	0.0	FJ842807.1 Brassica rapa subsp. pekinensis isolate BrTNL50 disease resistance protein gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013597556.1	0.0	PREDICTED: probable WRKY transcription factor 19 isoform X2
Swissprot	F4JT78	0.0	RPP2A_ARATH; Disease resistance protein RPP2A
TrEMBL	A0A0D3DF15	0.0	A0A0D3DF15_BRAOL; Uncharacterized protein
STRING	Bo7g106630.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12020.1	1e-146	WRKY family protein

Publications ? help Back to Top
Meyers BC,Morgante M,Michelmore RW TIR-X and TIR-NBS proteins: two new families related to disease resistance TIR-NBS-LRR proteins encoded in Arabidopsis and other plant genomes. Plant J., 2002. 32(1): p. 77-92 [PMID:12366802] Sinapidou E, et al. Two TIR:NB:LRR genes are required to specify resistance to Peronospora parasitica isolate Cala2 in Arabidopsis. Plant J., 2004. 38(6): p. 898-909 [PMID:15165183] Kempema LA,Cui X,Holzer FM,Walling LL Arabidopsis transcriptome changes in response to phloem-feeding silverleaf whitefly nymphs. Similarities and distinctions in responses to aphids. Plant Physiol., 2007. 143(2): p. 849-65 [PMID:17189325]