PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013597556.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C3H

Protein Properties

Length: 1194aa MW: 133847 Da PI: 8.1523

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013597556.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	39.5	9.8e-13	84	149	33	99
-SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++ l+++de+g+ We+ + + + + y lt+GW+++vk+++L +gD+v ++++ +++ +l++++ r+ XP_013597556.1 84 EMILRVQDEEGKPWEFGF-LDVNIQFYQLTNGWSNYVKEKQLGVGDIVFLQRIFTDSSRLFIGFSRR 149 56799***********.79999*************************9988888899998887 PP
2	zf-CCCH	35.2	2.1e-11	996	1022	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C ++++tG Ck+G+ CkF+H++ XP_013597556.1 996 PGEPECAYYMKTGGCKFGSDCKFHHPR 1022 5799*********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.3E-12	39	149	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.44E-7	45	147	No hit	No description
SuperFamily	SSF101936	7.65E-9	46	142	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	0.0027	46	150	IPR003340	B3 DNA binding domain
Pfam	PF02362	9.7E-11	83	149	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.391	87	150	IPR003340	B3 DNA binding domain
SMART	SM00255	0.0018	182	320	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain
Pfam	PF01582	2.4E-15	185	304	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain
SuperFamily	SSF52200	7.72E-12	201	295	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain
Gene3D	G3DSA:3.40.50.10140	8.3E-5	232	293	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain
SuperFamily	SSF52540	3.45E-39	349	592	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF00931	2.3E-20	351	597	IPR002182	NB-ARC
Gene3D	G3DSA:3.40.50.300	2.7E-5	364	498	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PRINTS	PR00364	1.2E-22	366	381	No hit	No description
PRINTS	PR00364	1.2E-22	442	456	No hit	No description
PRINTS	PR00364	1.2E-22	533	547	No hit	No description
SuperFamily	SSF46785	9.25E-5	569	672	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF52058	1.7E-32	695	921	IPR032675	Leucine-rich repeat domain, L domain-like
Gene3D	G3DSA:3.80.10.10	2.8E-26	729	925	IPR032675	Leucine-rich repeat domain, L domain-like
Pfam	PF07725	6.9E-7	758	775	IPR011713	Leucine-rich repeat 3
PRINTS	PR00364	1.2E-22	845	861	No hit	No description
PROSITE profile	PS50103	14.502	995	1023	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.8E-5	995	1022	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.4E-9	997	1022	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.44E-5	1000	1024	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.7E-4	1001	1023	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.385	1039	1067	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.69	1039	1066	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007165	Biological Process	signal transduction
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding
GO:0043531	Molecular Function	ADP binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1194 aa Download sequence Send to blast
MNSSGSDLFL ASLLLLIERD TIQCSNKSFL IETLSLSTFS EMEILFEKYL TTADLSWLNI 60 FLFGANEEVV EYFGLATVFA RGAEMILRVQ DEEGKPWEFG FLDVNIQFYQ LTNGWSNYVK 120 EKQLGVGDIV FLQRIFTDSS RLFIGFSRRE AALDGTSSDK LKEVNSPLPL RSHVHSVTEF 180 DPVLVFSCAA NQESGERYFI SYISTELCLR GFTPLIYDLT RGTLTGCLEL PHRSRVGIII 240 FSNNYASSRQ CQDNFVAIMD HSKANSLVLL PVFFKVKVTD IRGQSGSFGR AFSQLENSIQ 300 ASQVPTFTFI DKHQYMKGGE VILAKNIVSN VCLLLSSENN MKLRGRLQMN SVLSLLYCSQ 360 SSAPHIVGLW GMAGIGKTTI AREIFRTQAD RYDVCYFLPD FHIACQMRGL SHLRDEFFSK 420 IYGEEKVTVD ACDTKLSFLR DRFLSKKVLV VLDGVSSARD AEFLVGGFGW FSGGHTLILT 480 SRNRQVLIQC TAKEIYEIQK LSEHESLHVC SQFAAVQNWK ERTSLVSELV NYASGIPLAL 540 RALGSSLQNN CIVGEKQHLK TLRQHPLVEI QDAFKRSFDV LDGNEKHIFL DLACFFRGEN 600 KDYVVSILDA CGFFTDLGIY GLIDESLISL VGNRIEMPNI FQDTGRFVVC QENNETGKRS 660 RLLDPTDIVD VLTNNSGTEA IEGIFLDASG LTFELSTTAF EKMYRLRLLK LYCPTSENHC 720 KVSLPQGLYS LPDELRLLHW ERYPLGSLPR NFNPKNIVEL NMPYSNMTRL WKGTKNLERL 780 KRIILSHSRQ LTKFPRLSKA KNLELIDLEG CTSLVKVNSS ILHHQKLTFL SLKDCSRLRS 840 MPATVHLEAL KVLNLSGCSE LEDLQDFSPN LSELYLAGTA ITEIPSSIGG LTRLVTLDLE 900 NCNRLQHLPP EISNLKAVVS LSAKRPASSK ESRDLASFVD VAPPYRRYRL KRCIEAVILS 960 LRKRKREKIF SIATNLSEVM RASVSTWGFF GLPERPGEPE CAYYMKTGGC KFGSDCKFHH 1020 PRHRETHIPG LSSFSHPLRP GNPVCASYYY TGNCSSGATC MFDHPSSIPT HRDTSFVASL 1080 TPNLNPRGFS SSIGDSSSEL VEAATKKRRI HHNTSPMVSE TPLLNLRGFV SSIGDASSKL 1140 VEAPTSKVRI AARKKQRIHK NTTSMASETP HLNPPELSSS PGALSSEHVK QNKD

Sequence ? help Back to Top

Protein Sequence Length: 1194 aa Download sequence Send to blast

MNSSGSDLFL ASLLLLIERD TIQCSNKSFL IETLSLSTFS EMEILFEKYL TTADLSWLNI  60
FLFGANEEVV EYFGLATVFA RGAEMILRVQ DEEGKPWEFG FLDVNIQFYQ LTNGWSNYVK  120
EKQLGVGDIV FLQRIFTDSS RLFIGFSRRE AALDGTSSDK LKEVNSPLPL RSHVHSVTEF  180
DPVLVFSCAA NQESGERYFI SYISTELCLR GFTPLIYDLT RGTLTGCLEL PHRSRVGIII  240
FSNNYASSRQ CQDNFVAIMD HSKANSLVLL PVFFKVKVTD IRGQSGSFGR AFSQLENSIQ  300
ASQVPTFTFI DKHQYMKGGE VILAKNIVSN VCLLLSSENN MKLRGRLQMN SVLSLLYCSQ  360
SSAPHIVGLW GMAGIGKTTI AREIFRTQAD RYDVCYFLPD FHIACQMRGL SHLRDEFFSK  420
IYGEEKVTVD ACDTKLSFLR DRFLSKKVLV VLDGVSSARD AEFLVGGFGW FSGGHTLILT  480
SRNRQVLIQC TAKEIYEIQK LSEHESLHVC SQFAAVQNWK ERTSLVSELV NYASGIPLAL  540
RALGSSLQNN CIVGEKQHLK TLRQHPLVEI QDAFKRSFDV LDGNEKHIFL DLACFFRGEN  600
KDYVVSILDA CGFFTDLGIY GLIDESLISL VGNRIEMPNI FQDTGRFVVC QENNETGKRS  660
RLLDPTDIVD VLTNNSGTEA IEGIFLDASG LTFELSTTAF EKMYRLRLLK LYCPTSENHC  720
KVSLPQGLYS LPDELRLLHW ERYPLGSLPR NFNPKNIVEL NMPYSNMTRL WKGTKNLERL  780
KRIILSHSRQ LTKFPRLSKA KNLELIDLEG CTSLVKVNSS ILHHQKLTFL SLKDCSRLRS  840
MPATVHLEAL KVLNLSGCSE LEDLQDFSPN LSELYLAGTA ITEIPSSIGG LTRLVTLDLE  900
NCNRLQHLPP EISNLKAVVS LSAKRPASSK ESRDLASFVD VAPPYRRYRL KRCIEAVILS  960
LRKRKREKIF SIATNLSEVM RASVSTWGFF GLPERPGEPE CAYYMKTGGC KFGSDCKFHH  1020
PRHRETHIPG LSSFSHPLRP GNPVCASYYY TGNCSSGATC MFDHPSSIPT HRDTSFVASL  1080
TPNLNPRGFS SSIGDSSSEL VEAATKKRRI HHNTSPMVSE TPLLNLRGFV SSIGDASSKL  1140
VEAPTSKVRI AARKKQRIHK NTTSMASETP HLNPPELSSS PGALSSEHVK QNKD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	961	967	RKRKREK

Functional Description ? help Back to Top
Source	Description
UniProt	Disease resistance protein that cooperates with RPP2B to confer resistance to Hyaloperonospora parasitica isolate Cala2. {ECO:0000269\|PubMed:15165183}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013597556.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ842807	0.0	FJ842807.1 Brassica rapa subsp. pekinensis isolate BrTNL50 disease resistance protein gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013597556.1	0.0	PREDICTED: probable WRKY transcription factor 19 isoform X2
Swissprot	F4JT78	0.0	RPP2A_ARATH; Disease resistance protein RPP2A
TrEMBL	A0A0D3DF15	0.0	A0A0D3DF15_BRAOL; Uncharacterized protein
STRING	Bo7g106630.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12020.1	1e-145	WRKY family protein

Publications ? help Back to Top
Meyers BC,Morgante M,Michelmore RW TIR-X and TIR-NBS proteins: two new families related to disease resistance TIR-NBS-LRR proteins encoded in Arabidopsis and other plant genomes. Plant J., 2002. 32(1): p. 77-92 [PMID:12366802] Sinapidou E, et al. Two TIR:NB:LRR genes are required to specify resistance to Peronospora parasitica isolate Cala2 in Arabidopsis. Plant J., 2004. 38(6): p. 898-909 [PMID:15165183] Kempema LA,Cui X,Holzer FM,Walling LL Arabidopsis transcriptome changes in response to phloem-feeding silverleaf whitefly nymphs. Similarities and distinctions in responses to aphids. Plant Physiol., 2007. 143(2): p. 849-65 [PMID:17189325]