PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013597555.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C3H

Protein Properties

Length: 1234aa MW: 138529 Da PI: 8.1522

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013597555.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	39.5	1e-12	124	189	33	99
-SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++ l+++de+g+ We+ + + + + y lt+GW+++vk+++L +gD+v ++++ +++ +l++++ r+ XP_013597555.1 124 EMILRVQDEEGKPWEFGF-LDVNIQFYQLTNGWSNYVKEKQLGVGDIVFLQRIFTDSSRLFIGFSRR 189 56799***********.79999*************************9988888899998887 PP
2	zf-CCCH	35.1	2.2e-11	1036	1062	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C ++++tG Ck+G+ CkF+H++ XP_013597555.1 1036 PGEPECAYYMKTGGCKFGSDCKFHHPR 1062 5799*********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.4E-12	79	189	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	8.02E-7	85	187	No hit	No description
SMART	SM01019	0.0027	86	190	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	7.85E-9	86	182	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.0E-10	123	189	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.391	127	190	IPR003340	B3 DNA binding domain
SMART	SM00255	0.0018	222	360	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain
Pfam	PF01582	2.5E-15	225	344	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain
SuperFamily	SSF52200	8.11E-12	241	335	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain
Gene3D	G3DSA:3.40.50.10140	8.6E-5	272	333	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain
SuperFamily	SSF52540	3.67E-39	389	632	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF00931	2.4E-20	391	637	IPR002182	NB-ARC
Gene3D	G3DSA:3.40.50.300	2.8E-5	404	538	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PRINTS	PR00364	1.3E-22	406	421	No hit	No description
PRINTS	PR00364	1.3E-22	482	496	No hit	No description
PRINTS	PR00364	1.3E-22	573	587	No hit	No description
SuperFamily	SSF46785	9.52E-5	609	712	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF52058	1.7E-32	735	961	IPR032675	Leucine-rich repeat domain, L domain-like
Gene3D	G3DSA:3.80.10.10	3.0E-26	769	965	IPR032675	Leucine-rich repeat domain, L domain-like
Pfam	PF07725	7.2E-7	798	815	IPR011713	Leucine-rich repeat 3
PRINTS	PR00364	1.3E-22	885	901	No hit	No description
PROSITE profile	PS50103	14.502	1035	1063	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.8E-5	1035	1062	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.7E-9	1037	1062	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.57E-5	1040	1064	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	0.001	1041	1063	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.69	1079	1106	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.385	1079	1107	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007165	Biological Process	signal transduction
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding
GO:0043531	Molecular Function	ADP binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1234 aa Download sequence Send to blast
MNSRLGNEDL RSYFELYIII KNHSINQVGF NTRLVGGNDW TMNSGSDLFL ASLLLLIERD 60 TIQCSNKSFL IETLSLSTFS EMEILFEKYL TTADLSWLNI FLFGANEEVV EYFGLATVFA 120 RGAEMILRVQ DEEGKPWEFG FLDVNIQFYQ LTNGWSNYVK EKQLGVGDIV FLQRIFTDSS 180 RLFIGFSRRE AALDGTSSDK LKEVNSPLPL RSHVHSVTEF DPVLVFSCAA NQESGERYFI 240 SYISTELCLR GFTPLIYDLT RGTLTGCLEL PHRSRVGIII FSNNYASSRQ CQDNFVAIMD 300 HSKANSLVLL PVFFKVKVTD IRGQSGSFGR AFSQLENSIQ ASQVPTFTFI DKHQYMKGGE 360 VILAKNIVSN VCLLLSSENN MKLRGRLQMN SVLSLLYCSQ SSAPHIVGLW GMAGIGKTTI 420 AREIFRTQAD RYDVCYFLPD FHIACQMRGL SHLRDEFFSK IYGEEKVTVD ACDTKLSFLR 480 DRFLSKKVLV VLDGVSSARD AEFLVGGFGW FSGGHTLILT SRNRQVLIQC TAKEIYEIQK 540 LSEHESLHVC SQFAAVQNWK ERTSLVSELV NYASGIPLAL RALGSSLQNN CIVGEKQHLK 600 TLRQHPLVEI QDAFKRSFDV LDGNEKHIFL DLACFFRGEN KDYVVSILDA CGFFTDLGIY 660 GLIDESLISL VGNRIEMPNI FQDTGRFVVC QENNETGKRS RLLDPTDIVD VLTNNSGTEA 720 IEGIFLDASG LTFELSTTAF EKMYRLRLLK LYCPTSENHC KVSLPQGLYS LPDELRLLHW 780 ERYPLGSLPR NFNPKNIVEL NMPYSNMTRL WKGTKNLERL KRIILSHSRQ LTKFPRLSKA 840 KNLELIDLEG CTSLVKVNSS ILHHQKLTFL SLKDCSRLRS MPATVHLEAL KVLNLSGCSE 900 LEDLQDFSPN LSELYLAGTA ITEIPSSIGG LTRLVTLDLE NCNRLQHLPP EISNLKAVVS 960 LSAKRPASSK ESRDLASFVD VAPPYRRYRL KRCIEAVILS LRKRKREKIF SIATNLSEVM 1020 RASVSTWGFF GLPERPGEPE CAYYMKTGGC KFGSDCKFHH PRHRETHIPG LSSFSHPLRP 1080 GNPVCASYYY TGNCSSGATC MFDHPSSIPT HRDTSFVASL TPNLNPRGFS SSIGDSSSEL 1140 VEAATKKRRI HHNTSPMVSE TPLLNLRGFV SSIGDASSKL VEAPTSKVRI AARKKQRIHK 1200 NTTSMASETP HLNPPELSSS PGALSSEHVK QNKD

Sequence ? help Back to Top

Protein Sequence Length: 1234 aa Download sequence Send to blast

MNSRLGNEDL RSYFELYIII KNHSINQVGF NTRLVGGNDW TMNSGSDLFL ASLLLLIERD  60
TIQCSNKSFL IETLSLSTFS EMEILFEKYL TTADLSWLNI FLFGANEEVV EYFGLATVFA  120
RGAEMILRVQ DEEGKPWEFG FLDVNIQFYQ LTNGWSNYVK EKQLGVGDIV FLQRIFTDSS  180
RLFIGFSRRE AALDGTSSDK LKEVNSPLPL RSHVHSVTEF DPVLVFSCAA NQESGERYFI  240
SYISTELCLR GFTPLIYDLT RGTLTGCLEL PHRSRVGIII FSNNYASSRQ CQDNFVAIMD  300
HSKANSLVLL PVFFKVKVTD IRGQSGSFGR AFSQLENSIQ ASQVPTFTFI DKHQYMKGGE  360
VILAKNIVSN VCLLLSSENN MKLRGRLQMN SVLSLLYCSQ SSAPHIVGLW GMAGIGKTTI  420
AREIFRTQAD RYDVCYFLPD FHIACQMRGL SHLRDEFFSK IYGEEKVTVD ACDTKLSFLR  480
DRFLSKKVLV VLDGVSSARD AEFLVGGFGW FSGGHTLILT SRNRQVLIQC TAKEIYEIQK  540
LSEHESLHVC SQFAAVQNWK ERTSLVSELV NYASGIPLAL RALGSSLQNN CIVGEKQHLK  600
TLRQHPLVEI QDAFKRSFDV LDGNEKHIFL DLACFFRGEN KDYVVSILDA CGFFTDLGIY  660
GLIDESLISL VGNRIEMPNI FQDTGRFVVC QENNETGKRS RLLDPTDIVD VLTNNSGTEA  720
IEGIFLDASG LTFELSTTAF EKMYRLRLLK LYCPTSENHC KVSLPQGLYS LPDELRLLHW  780
ERYPLGSLPR NFNPKNIVEL NMPYSNMTRL WKGTKNLERL KRIILSHSRQ LTKFPRLSKA  840
KNLELIDLEG CTSLVKVNSS ILHHQKLTFL SLKDCSRLRS MPATVHLEAL KVLNLSGCSE  900
LEDLQDFSPN LSELYLAGTA ITEIPSSIGG LTRLVTLDLE NCNRLQHLPP EISNLKAVVS  960
LSAKRPASSK ESRDLASFVD VAPPYRRYRL KRCIEAVILS LRKRKREKIF SIATNLSEVM  1020
RASVSTWGFF GLPERPGEPE CAYYMKTGGC KFGSDCKFHH PRHRETHIPG LSSFSHPLRP  1080
GNPVCASYYY TGNCSSGATC MFDHPSSIPT HRDTSFVASL TPNLNPRGFS SSIGDSSSEL  1140
VEAATKKRRI HHNTSPMVSE TPLLNLRGFV SSIGDASSKL VEAPTSKVRI AARKKQRIHK  1200
NTTSMASETP HLNPPELSSS PGALSSEHVK QNKD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1001	1007	RKRKREK

Functional Description ? help Back to Top
Source	Description
UniProt	Disease resistance protein that cooperates with RPP2B to confer resistance to Hyaloperonospora parasitica isolate Cala2. {ECO:0000269\|PubMed:15165183}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013597555.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ842807	0.0	FJ842807.1 Brassica rapa subsp. pekinensis isolate BrTNL50 disease resistance protein gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013597555.1	0.0	PREDICTED: probable WRKY transcription factor 19 isoform X1
Swissprot	F4JT78	0.0	RPP2A_ARATH; Disease resistance protein RPP2A
TrEMBL	A0A0D3DF15	0.0	A0A0D3DF15_BRAOL; Uncharacterized protein
STRING	Bo7g106630.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5462	9	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12020.1	1e-145	WRKY family protein

Publications ? help Back to Top
Meyers BC,Morgante M,Michelmore RW TIR-X and TIR-NBS proteins: two new families related to disease resistance TIR-NBS-LRR proteins encoded in Arabidopsis and other plant genomes. Plant J., 2002. 32(1): p. 77-92 [PMID:12366802] Sinapidou E, et al. Two TIR:NB:LRR genes are required to specify resistance to Peronospora parasitica isolate Cala2 in Arabidopsis. Plant J., 2004. 38(6): p. 898-909 [PMID:15165183] Kempema LA,Cui X,Holzer FM,Walling LL Arabidopsis transcriptome changes in response to phloem-feeding silverleaf whitefly nymphs. Similarities and distinctions in responses to aphids. Plant Physiol., 2007. 143(2): p. 849-65 [PMID:17189325]