PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013597484.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | LBD | ||||||||
Protein Properties | Length: 336aa MW: 37364.5 Da PI: 7.0714 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.3 | 2.3e-42 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC+++Cv+apyfp ++p+kf +vhk+FGasnv kll+++ ++reda++sl+yeAear+rdPvyG+vg+i+ lq++ +ql+++l+ XP_013597484.1 7 PCAACKFLRRKCTQECVFAPYFPPDNPQKFSYVHKVFGASNVAKLLNEIAANQREDAVNSLFYEAEARLRDPVYGCVGLISILQHRHKQLQQDLE 101 7********************************************************************************************** PP DUF260 96 llkee 100 +k+e XP_013597484.1 102 NAKKE 106 99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038155 | 1.1E-92 | 4 | 330 | IPR017414 | LOB domain-containing protein 10/36/41 |
PROSITE profile | PS50891 | 26.436 | 6 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.9E-42 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009954 | Biological Process | proximal/distal pattern formation | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0048441 | Biological Process | petal development |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MASSSSPCAA CKFLRRKCTQ ECVFAPYFPP DNPQKFSYVH KVFGASNVAK LLNEIAANQR 60 EDAVNSLFYE AEARLRDPVY GCVGLISILQ HRHKQLQQDL ENAKKELAAY VGPQDMLPIL 120 QTHHHPQPHF MSIPPQPQRP SSSSSSASVL TQQQQLHHNL FPMMAIPTGQ LYHQQQQNIF 180 EAQQLAAVNA VAREQQQNEL FRAFGAGGGS NTSPHHYHQN QPQVEVLRFD NGFDFVPTGS 240 VTVTGFNQLS SCGTTVTGMS PSLALGGNFV DSPPTNDSYH TDQQLHHHHQ KQQHHEAQLF 300 IPTQSSQPLP LQTQETQTQS NSESGEGRRS IIDSSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-47 | 3 | 110 | 7 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-47 | 3 | 110 | 7 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in trichomes, at the base of many lateral organs, including branching points of the inflorescence and floral organs and in the distal part of the pistil at stages when style and stigma start to develop. Also detected in pedicels and at the base of petals and sepals. {ECO:0000269|PubMed:15821980}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013597484.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013597483.1 | 0.0 | PREDICTED: LOB domain-containing protein 36 isoform X1 | ||||
Refseq | XP_013597484.1 | 0.0 | PREDICTED: LOB domain-containing protein 36 isoform X1 | ||||
Refseq | XP_013597485.1 | 0.0 | PREDICTED: LOB domain-containing protein 36 isoform X2 | ||||
Swissprot | Q9FKZ3 | 1e-153 | LBD36_ARATH; LOB domain-containing protein 36 | ||||
TrEMBL | A0A0D3D8B9 | 0.0 | A0A0D3D8B9_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g064360.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 1e-131 | ASYMMETRIC LEAVES 2-like 1 |
Publications ? help Back to Top | |||
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