PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013597448.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 1617aa MW: 177018 Da PI: 6.5332

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013597448.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38	3.7e-12	848	889	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE e ++d +++G++ +k+Ia+++ +t +c+++++k XP_013597448.1 848 PWTPEEKETFLDMLAMHGKD-FKKIASYLS-QKTTADCVEYYYK 889 8***************99.*****.9********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.92E-15	832	893	IPR009057	Homeodomain-like
PROSITE profile	PS51293	16.052	844	895	IPR017884	SANT domain
SMART	SM00717	1.6E-11	845	893	IPR001005	SANT/Myb domain
Pfam	PF00249	8.4E-10	847	889	IPR001005	SANT/Myb domain
CDD	cd00167	1.11E-8	848	890	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.6E-8	848	893	IPR009057	Homeodomain-like
PROSITE profile	PS51293	10.916	1050	1101	IPR017884	SANT domain
SMART	SM00717	3.0E-5	1051	1099	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.84E-8	1054	1101	IPR009057	Homeodomain-like
CDD	cd00167	1.01E-4	1055	1096	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1617 aa Download sequence Send to blast
MPQDHASWDR KELPRLRKRD RPSEPPPPFD SPPSPSSHRD FSRWGSASDF RRPNCHGKQG 60 GRYQFAEETS HDYYRQSAPR GDWRYTRNCR DDRVPLSQKE KCNTLDMSNS SSRAFERPCG 120 VRNGRRSVDE RPLHASDAHT TLVNSWDSPN STHQPDIEMC TPVQTLKFKN ELKFSDQRPS 180 LPIDPHSDCL SLSERPSSEN SYENKECSTA NQSNGLMYAR RLANDNSLDP PIRHAELEGT 240 RKQLHLENME DNRLRGGLRG VSDLDGTMKS GKESSLGATG KPPVCSGSFS SQSSGFSHSS 300 SFKSLGAGDS SDRKQKVIPK IVAATQSSSG DATACATTTL SEEMIARKKR LGWGEGLAKY 360 ENKKVDVNTT EDGTALLENG TGELRSLNKN ITDESPTAAI APDYGSPTTP SSVDCSSSPG 420 FADKSSAKAA IGASDVSNMC RSPSPVSSNY LERLPINIDE LDDVSMERFG CLLSELLGTD 480 DPVIGDFCSA QLTSMNRLLA WKGDILKAVE MAESEIDLLE NKQKALKIEG GRQCRVVEPS 540 SYVCQGDENV FKKQENPCIL GPKIVASSVA ETLVRDPVHQ AVSAKAPVEI FGDSTGEVKS 600 LTQAFATAGS NEDILPIPSV RAVASSKAIN TSAVSSQEAI DLFSADDMVS NEDLHCAKLL 660 STNKIYASES SGVFNELLPR EFSSFDDLRF LGVRQRQFDS HVKEKIADRI ELLRAREKIL 720 LLRFKAFQFA WKKDLHQLAL TKRQPKSNKR TEVLPNAKIS GRLKLPQPLR LRLSSSAQRR 780 DSVASTTELV SYMKKLQNGT HLTPFRDILR MPAMILDEKE RARSRFISSN GMIEDPCDVE 840 KERTKINPWT PEEKETFLDM LAMHGKDFKK IASYLSQKTT ADCVEYYYKN HKSDSFGKIK 900 KQRGYGKEGK HTYMLAPRKK WNREMGAASL DILGAVSIIA SNAGKVASTR QISSKRITLR 960 GSSSSSSLQH DGKYSEGCSH SFGFPRKRNL GADVVAVGPL SSEQINSREE CMYHLKIDPA 1020 AKKPRISHST HNENSNEDDD SCSEESCEET GPIHWTDAER SAFIQGFSLF GKNFASLSSF 1080 VRTRSPDQCR VFFSKVRKCL GLECRQSGSA NVSTSASVDN ANEGVGGSDL EDPCAMESIA 1140 AICNDGVSAK IGLNSPTSPF NMNQDGANHS GSANVEAGLS RSEQDIGLTL LCLKDGTSLV 1200 NNACSNGDFP GVVSEPLVNN ITGETQCQAA EQINSNDPLS MEIDEGNLTS VAEETIKSSD 1260 QLSMELEEGN LTPVAVSSDP LYCGASAIIV ETPTESSHKG SGGEGAALPN QSSKQQDGVN 1320 EAANRAINNG LEAEAAPSSF RYPECLHHVP IEEDLVDVSV PQGDPSCHTE SELSNSLVVQ 1380 TNNMGWQFSE VNLNLDRRLR IVGHVKPEQS GRLNATSTEP CQIPWRSFTQ DPSRISRSKS 1440 DLIVNNQHTG EGFSLKKCTS SATKPLTVFH KDGRSGHSRS HSFSLSDSER LDKNGDVKLF 1500 GTVLTADDNG SKQKQNPGAS IRSSSTLSGD HQYINQQHLQ NVPITSYSFW DGSRIQTVLT 1560 SLPESAKLLA SYPEALSTHL KQQVVSSKEI QLDVSGILSF GKHIEERADV SSGKDER

Sequence ? help Back to Top

Protein Sequence Length: 1617 aa Download sequence Send to blast

MPQDHASWDR KELPRLRKRD RPSEPPPPFD SPPSPSSHRD FSRWGSASDF RRPNCHGKQG  60
GRYQFAEETS HDYYRQSAPR GDWRYTRNCR DDRVPLSQKE KCNTLDMSNS SSRAFERPCG  120
VRNGRRSVDE RPLHASDAHT TLVNSWDSPN STHQPDIEMC TPVQTLKFKN ELKFSDQRPS  180
LPIDPHSDCL SLSERPSSEN SYENKECSTA NQSNGLMYAR RLANDNSLDP PIRHAELEGT  240
RKQLHLENME DNRLRGGLRG VSDLDGTMKS GKESSLGATG KPPVCSGSFS SQSSGFSHSS  300
SFKSLGAGDS SDRKQKVIPK IVAATQSSSG DATACATTTL SEEMIARKKR LGWGEGLAKY  360
ENKKVDVNTT EDGTALLENG TGELRSLNKN ITDESPTAAI APDYGSPTTP SSVDCSSSPG  420
FADKSSAKAA IGASDVSNMC RSPSPVSSNY LERLPINIDE LDDVSMERFG CLLSELLGTD  480
DPVIGDFCSA QLTSMNRLLA WKGDILKAVE MAESEIDLLE NKQKALKIEG GRQCRVVEPS  540
SYVCQGDENV FKKQENPCIL GPKIVASSVA ETLVRDPVHQ AVSAKAPVEI FGDSTGEVKS  600
LTQAFATAGS NEDILPIPSV RAVASSKAIN TSAVSSQEAI DLFSADDMVS NEDLHCAKLL  660
STNKIYASES SGVFNELLPR EFSSFDDLRF LGVRQRQFDS HVKEKIADRI ELLRAREKIL  720
LLRFKAFQFA WKKDLHQLAL TKRQPKSNKR TEVLPNAKIS GRLKLPQPLR LRLSSSAQRR  780
DSVASTTELV SYMKKLQNGT HLTPFRDILR MPAMILDEKE RARSRFISSN GMIEDPCDVE  840
KERTKINPWT PEEKETFLDM LAMHGKDFKK IASYLSQKTT ADCVEYYYKN HKSDSFGKIK  900
KQRGYGKEGK HTYMLAPRKK WNREMGAASL DILGAVSIIA SNAGKVASTR QISSKRITLR  960
GSSSSSSLQH DGKYSEGCSH SFGFPRKRNL GADVVAVGPL SSEQINSREE CMYHLKIDPA  1020
AKKPRISHST HNENSNEDDD SCSEESCEET GPIHWTDAER SAFIQGFSLF GKNFASLSSF  1080
VRTRSPDQCR VFFSKVRKCL GLECRQSGSA NVSTSASVDN ANEGVGGSDL EDPCAMESIA  1140
AICNDGVSAK IGLNSPTSPF NMNQDGANHS GSANVEAGLS RSEQDIGLTL LCLKDGTSLV  1200
NNACSNGDFP GVVSEPLVNN ITGETQCQAA EQINSNDPLS MEIDEGNLTS VAEETIKSSD  1260
QLSMELEEGN LTPVAVSSDP LYCGASAIIV ETPTESSHKG SGGEGAALPN QSSKQQDGVN  1320
EAANRAINNG LEAEAAPSSF RYPECLHHVP IEEDLVDVSV PQGDPSCHTE SELSNSLVVQ  1380
TNNMGWQFSE VNLNLDRRLR IVGHVKPEQS GRLNATSTEP CQIPWRSFTQ DPSRISRSKS  1440
DLIVNNQHTG EGFSLKKCTS SATKPLTVFH KDGRSGHSRS HSFSLSDSER LDKNGDVKLF  1500
GTVLTADDNG SKQKQNPGAS IRSSSTLSGD HQYINQQHLQ NVPITSYSFW DGSRIQTVLT  1560
SLPESAKLLA SYPEALSTHL KQQVVSSKEI QLDVSGILSF GKHIEERADV SSGKDER

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	2e-17	806	896	4	93	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	2e-17	806	896	4	93	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013597448.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013597448.1	0.0	PREDICTED: uncharacterized protein LOC106305642 isoform X2
TrEMBL	A0A0D3DE47	0.0	A0A0D3DE47_BRAOL; Uncharacterized protein
STRING	Bo7g101470.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	0.0	MYB family protein