PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013597428.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 241aa MW: 27002.3 Da PI: 4.9528 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.6 | 7.4e-19 | 36 | 85 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr+++ +gr++AeIr p++ + r++lg+f+taeeAa a+++a+++++g XP_013597428.1 36 KYVGVRRRP-WGRYAAEIRNPTT---KERHWLGTFDTAEEAALAYDRAARSIRG 85 79*******.**********965...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.074 | 36 | 93 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.0E-13 | 36 | 85 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.81E-21 | 36 | 94 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.5E-32 | 36 | 99 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.10E-30 | 36 | 92 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.3E-28 | 36 | 93 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-8 | 37 | 48 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-8 | 59 | 75 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MDFNGNVNAG SSSISKKSHR QKQQQPQPQQ LTEEIKYVGV RRRPWGRYAA EIRNPTTKER 60 HWLGTFDTAE EAALAYDRAA RSIRGLTART NFVYSDMPRG SSVTSFISPD ESQRFISELF 120 NPPSQLEAPH SSNNNNLYLS ANNQNQNSIE FAYNGWTHES ECGYQSMKTN DEHCNHELAP 180 LPPSTCSGAE LTIPETDSYW NLAHAGMDTF SFEIDGFVDQ NSLGESGTEG FGSSSSTFFY 240 Q |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-18 | 32 | 92 | 10 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00163 | DAP | Transfer from AT1G28160 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013597428.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC021044 | 0.0 | AC021044.5 Arabidopsis thaliana chromosome I BAC F3H9 genomic sequence, complete sequence. | |||
GenBank | AC069471 | 0.0 | AC069471.4 Arabidopsis thaliana chromosome 1 BAC F13K9 genomic sequence, complete sequence. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013597428.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF087-like | ||||
Swissprot | Q9FZ90 | 1e-133 | ERF87_ARATH; Ethylene-responsive transcription factor ERF087 | ||||
TrEMBL | A0A0D3D6B6 | 0.0 | A0A0D3D6B6_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g048420.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12933 | 15 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28160.1 | 1e-101 | ERF family protein |
Publications ? help Back to Top | |||
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