PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013597423.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 1114aa MW: 124295 Da PI: 6.0301

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013597423.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	90.4	3.9e-28	55	138	10	92
TCP 10 kihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaak 92 k++ k +g+ RR R++a+caar+F+L+ eLG+++d++tieWLlqqa+pa ++tgt+s++a+ + ++s +ss+s+ s++ ++k XP_013597423.1 55 KRSRKDDGKVRRLRMPALCAARLFQLTGELGHKSDGETIEWLLQQAEPALVAATGTGSIPANYSsLNVSLRSSGSTLSAPPSSK 138 89999***************************************************9999977778888888888666663332 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	16.905	53	107	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	4.7E-26	64	167	IPR005333	Transcription factor, TCP
Pfam	PF00403	2.8E-5	197	238	IPR006121	Heavy metal-associated domain, HMA
PROSITE profile	PS51697	20.394	300	397	IPR006936	ALOG domain
SuperFamily	SSF52200	2.75E-6	402	500	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain
Pfam	PF00931	1.0E-20	533	777	IPR002182	NB-ARC
SuperFamily	SSF52540	1.37E-35	537	769	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Gene3D	G3DSA:3.40.50.300	1.7E-4	546	680	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PRINTS	PR00364	3.0E-16	548	563	No hit	No description
PRINTS	PR00364	3.0E-16	624	638	No hit	No description
PRINTS	PR00364	3.0E-16	710	724	No hit	No description
SuperFamily	SSF46785	1.2E-5	745	849	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:3.40.50.300	1.2E-10	797	848	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SuperFamily	SSF52058	4.76E-31	867	1106	IPR032675	Leucine-rich repeat domain, L domain-like
Gene3D	G3DSA:3.80.10.10	8.9E-24	874	1104	IPR032675	Leucine-rich repeat domain, L domain-like
Pfam	PF07725	8.4E-10	934	953	IPR011713	Leucine-rich repeat 3
PRINTS	PR00364	3.0E-16	1023	1039	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007165	Biological Process	signal transduction
GO:0030001	Biological Process	metal ion transport
GO:0005515	Molecular Function	protein binding
GO:0043531	Molecular Function	ADP binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1114 aa Download sequence Send to blast
MDISDDDDDS DARGGSPHLV YPSLKIVPKS AFPEDATLAT TSSSPAAATS GVITKRSRKD 60 DGKVRRLRMP ALCAARLFQL TGELGHKSDG ETIEWLLQQA EPALVAATGT GSIPANYSSL 120 NVSLRSSGST LSAPPSSKSV PLYGAPAASG DLTPPILGFQ RPSSLISEVT KEPGPEKSSK 180 NKLVLELDIG GDKSMQKKVM KKLAALSGIN YISLDPETGT FTIKGDIELN TVLEKVERYC 240 SCKRVVEPKK KDQQSVLQGE VSMGEALTSE QILRSTAGSG DSCSGINIPV VPGKSIITPS 300 NVRNLDDAWY SFCDFLDQRM RPLTLSGYTA KDAIDFLSTR QTSGNTEALV RRLSAACEAF 360 GITTKENPFR SLAVITYLKE TRAITREADG VLVFSCNDNL DEDETHLIEA ISKELHEQGV 420 TPLTYNLYQR DLDGDMLYRS SVGIMVVSNS FAFSSQSLDL LVAIMEFCKA KRLVIIPVYL 480 KADRIQKWKE ALTDVASIDG HQWSEGSQFM LAKKVVRNAC FRLHLKSSKN LVRILALLNH 540 PQPLEAEIEG IWGMAGIGKT SIAREIFELL APQYDLCYFL QDFHRMCKSK GLRQIRDDFL 600 SKVFREEELC LGACDTKPSF MRDWFLNREI LVVLDDVSNA RDAEYVFGGF SWFSRGHRII 660 LTSRSKQVLV QCKVKEPYEI QKLSDFESFR LCKQYLKEES AIMSELMSCS SGIPLALKSF 720 VSSVSKQHMN DMKKHLQSLR INPPTKIQEA FRRSFDGLDE NGKNIFLDLA CFFRGENKEH 780 VVQLLDACGF FTYLGICDLI DESLISLLDN KIEIPIPFQD IARFIVREED MDPCERSRLW 840 DSNDIIDVLT NNSGTEAIEG IFLDASDLTC ELSPTVFSNM YRLRLLKFYC SNTSGNQCKQ 900 SLPQGLDTLP DELRLLHWEH YPLGYLPQKF SPENLVEINM PYSNIEKLWE GKKNLEKLKK 960 IKLSHSRKLT DVLTLSEAMN LEHIDFEGCT SLIDVSTSIT HLGKLVSLNM KDCCQLRRLP 1020 SMVDLTSLKV VNLSGCSGLE DIQDFSPNLE ELYLAGTAIR ELPFSVENLT ELSTLDLENC 1080 VRLQKLPSGV RNSRSIVNLK LSGCTSLELG KRKR

Sequence ? help Back to Top

Protein Sequence Length: 1114 aa Download sequence Send to blast

MDISDDDDDS DARGGSPHLV YPSLKIVPKS AFPEDATLAT TSSSPAAATS GVITKRSRKD  60
DGKVRRLRMP ALCAARLFQL TGELGHKSDG ETIEWLLQQA EPALVAATGT GSIPANYSSL  120
NVSLRSSGST LSAPPSSKSV PLYGAPAASG DLTPPILGFQ RPSSLISEVT KEPGPEKSSK  180
NKLVLELDIG GDKSMQKKVM KKLAALSGIN YISLDPETGT FTIKGDIELN TVLEKVERYC  240
SCKRVVEPKK KDQQSVLQGE VSMGEALTSE QILRSTAGSG DSCSGINIPV VPGKSIITPS  300
NVRNLDDAWY SFCDFLDQRM RPLTLSGYTA KDAIDFLSTR QTSGNTEALV RRLSAACEAF  360
GITTKENPFR SLAVITYLKE TRAITREADG VLVFSCNDNL DEDETHLIEA ISKELHEQGV  420
TPLTYNLYQR DLDGDMLYRS SVGIMVVSNS FAFSSQSLDL LVAIMEFCKA KRLVIIPVYL  480
KADRIQKWKE ALTDVASIDG HQWSEGSQFM LAKKVVRNAC FRLHLKSSKN LVRILALLNH  540
PQPLEAEIEG IWGMAGIGKT SIAREIFELL APQYDLCYFL QDFHRMCKSK GLRQIRDDFL  600
SKVFREEELC LGACDTKPSF MRDWFLNREI LVVLDDVSNA RDAEYVFGGF SWFSRGHRII  660
LTSRSKQVLV QCKVKEPYEI QKLSDFESFR LCKQYLKEES AIMSELMSCS SGIPLALKSF  720
VSSVSKQHMN DMKKHLQSLR INPPTKIQEA FRRSFDGLDE NGKNIFLDLA CFFRGENKEH  780
VVQLLDACGF FTYLGICDLI DESLISLLDN KIEIPIPFQD IARFIVREED MDPCERSRLW  840
DSNDIIDVLT NNSGTEAIEG IFLDASDLTC ELSPTVFSNM YRLRLLKFYC SNTSGNQCKQ  900
SLPQGLDTLP DELRLLHWEH YPLGYLPQKF SPENLVEINM PYSNIEKLWE GKKNLEKLKK  960
IKLSHSRKLT DVLTLSEAMN LEHIDFEGCT SLIDVSTSIT HLGKLVSLNM KDCCQLRRLP  1020
SMVDLTSLKV VNLSGCSGLE DIQDFSPNLE ELYLAGTAIR ELPFSVENLT ELSTLDLENC  1080
VRLQKLPSGV RNSRSIVNLK LSGCTSLELG KRKR

Functional Description ? help Back to Top
Source	Description
UniProt	Disease resistance protein that cooperates with RPP2B to confer resistance to Hyaloperonospora parasitica isolate Cala2. {ECO:0000269\|PubMed:15165183}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013597423.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013597423.1	0.0	PREDICTED: probable WRKY transcription factor 19 isoform X2
Swissprot	F4JT78	0.0	RPP2A_ARATH; Disease resistance protein RPP2A
TrEMBL	A0A0D3A4E2	0.0	A0A0D3A4E2_BRAOL; Uncharacterized protein
STRING	Bo1g021620.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12020.1	1e-132	WRKY family protein

Publications ? help Back to Top
Meyers BC,Morgante M,Michelmore RW TIR-X and TIR-NBS proteins: two new families related to disease resistance TIR-NBS-LRR proteins encoded in Arabidopsis and other plant genomes. Plant J., 2002. 32(1): p. 77-92 [PMID:12366802] Sinapidou E, et al. Two TIR:NB:LRR genes are required to specify resistance to Peronospora parasitica isolate Cala2 in Arabidopsis. Plant J., 2004. 38(6): p. 898-909 [PMID:15165183] Kempema LA,Cui X,Holzer FM,Walling LL Arabidopsis transcriptome changes in response to phloem-feeding silverleaf whitefly nymphs. Similarities and distinctions in responses to aphids. Plant Physiol., 2007. 143(2): p. 849-65 [PMID:17189325]