PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013597417.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TCP | ||||||||
Protein Properties | Length: 1139aa MW: 127247 Da PI: 5.675 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 90.4 | 4e-28 | 55 | 138 | 10 | 92 |
TCP 10 kihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaak 92 k++ k +g+ RR R++a+caar+F+L+ eLG+++d++tieWLlqqa+pa ++tgt+s++a+ + ++s +ss+s+ s++ ++k XP_013597417.1 55 KRSRKDDGKVRRLRMPALCAARLFQLTGELGHKSDGETIEWLLQQAEPALVAATGTGSIPANYSsLNVSLRSSGSTLSAPPSSK 138 89999***************************************************9999977778888888888666663332 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 16.905 | 53 | 107 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 4.9E-26 | 64 | 167 | IPR005333 | Transcription factor, TCP |
Pfam | PF00403 | 2.9E-5 | 197 | 238 | IPR006121 | Heavy metal-associated domain, HMA |
PROSITE profile | PS51697 | 20.394 | 300 | 397 | IPR006936 | ALOG domain |
SuperFamily | SSF52200 | 1.11E-8 | 402 | 525 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
Pfam | PF01582 | 4.2E-10 | 439 | 535 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
Pfam | PF00931 | 1.1E-20 | 558 | 802 | IPR002182 | NB-ARC |
SuperFamily | SSF52540 | 1.44E-35 | 562 | 794 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Gene3D | G3DSA:3.40.50.300 | 1.8E-4 | 571 | 704 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PRINTS | PR00364 | 3.3E-16 | 573 | 588 | No hit | No description |
PRINTS | PR00364 | 3.3E-16 | 649 | 663 | No hit | No description |
PRINTS | PR00364 | 3.3E-16 | 735 | 749 | No hit | No description |
SuperFamily | SSF46785 | 1.25E-5 | 770 | 874 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:3.40.50.300 | 1.3E-10 | 822 | 873 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SuperFamily | SSF52058 | 4.99E-31 | 892 | 1131 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 9.2E-24 | 899 | 1129 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Pfam | PF07725 | 8.6E-10 | 959 | 978 | IPR011713 | Leucine-rich repeat 3 |
PRINTS | PR00364 | 3.3E-16 | 1048 | 1064 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0030001 | Biological Process | metal ion transport | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043531 | Molecular Function | ADP binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1139 aa Download sequence Send to blast |
MDISDDDDDS DARGGSPHLV YPSLKIVPKS AFPEDATLAT TSSSPAAATS GVITKRSRKD 60 DGKVRRLRMP ALCAARLFQL TGELGHKSDG ETIEWLLQQA EPALVAATGT GSIPANYSSL 120 NVSLRSSGST LSAPPSSKSV PLYGAPAASG DLTPPILGFQ RPSSLISEVT KEPGPEKSSK 180 NKLVLELDIG GDKSMQKKVM KKLAALSGIN YISLDPETGT FTIKGDIELN TVLEKVERYC 240 SCKRVVEPKK KDQQSVLQGE VSMGEALTSE QILRSTAGSG DSCSGINIPV VPGKSIITPS 300 NVRNLDDAWY SFCDFLDQRM RPLTLSGYTA KDAIDFLSTR QTSGNTEALV RRLSAACEAF 360 GITTKENPFR SLAVITYLKE TRAITREADG VLVFSCNDNL DEDETHLIEA ISKELHEQGV 420 TPLTYNLYQR DLDGDMLYRS SVGIMVVSNS FAFSSQSLDL LVAIMEFCKA KRLVIIPVYL 480 KVTPSDICEW EDRFEQVLPS YLNSIQADRI QKWKEALTDV ASIDGHQWSE GSQFMLAKKV 540 VRNACFRLHL KSSKNLVRIL ALLNHPQPLE AEIEGIWGMA GIGKTSIARE IFELLAPQYD 600 LCYFLQDFHR MCKSKGLRQI RDDFLSKVFR EEELCLGACD TKPSFMRDWF LNREILVVLD 660 DVSNARDAEY VFGGFSWFSR GHRIILTSRS KQVLVQCKVK EPYEIQKLSD FESFRLCKQY 720 LKEESAIMSE LMSCSSGIPL ALKSFVSSVS KQHMNDMKKH LQSLRINPPT KIQEAFRRSF 780 DGLDENGKNI FLDLACFFRG ENKEHVVQLL DACGFFTYLG ICDLIDESLI SLLDNKIEIP 840 IPFQDIARFI VREEDMDPCE RSRLWDSNDI IDVLTNNSGT EAIEGIFLDA SDLTCELSPT 900 VFSNMYRLRL LKFYCSNTSG NQCKQSLPQG LDTLPDELRL LHWEHYPLGY LPQKFSPENL 960 VEINMPYSNI EKLWEGKKNL EKLKKIKLSH SRKLTDVLTL SEAMNLEHID FEGCTSLIDV 1020 STSITHLGKL VSLNMKDCCQ LRRLPSMVDL TSLKVVNLSG CSGLEDIQDF SPNLEELYLA 1080 GTAIRELPFS VENLTELSTL DLENCVRLQK LPSGVRNSRS IVNLKLSGCT SLELGKRKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Disease resistance protein that cooperates with RPP2B to confer resistance to Hyaloperonospora parasitica isolate Cala2. {ECO:0000269|PubMed:15165183}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013597417.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013597417.1 | 0.0 | PREDICTED: probable WRKY transcription factor 19 isoform X1 | ||||
Swissprot | F4JT78 | 0.0 | RPP2A_ARATH; Disease resistance protein RPP2A | ||||
TrEMBL | A0A0D3A4E2 | 0.0 | A0A0D3A4E2_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g021620.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5462 | 9 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12020.3 | 1e-135 | WRKY family protein |
Publications ? help Back to Top | |||
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