PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013597406.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 308aa MW: 34120.3 Da PI: 7.423 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56 | 1e-17 | 66 | 116 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +gr++AeIrdp + r +lg+f+taeeAa a++ a+++++g+ XP_013597406.1 66 RYRGVRRRP-WGRYAAEIRDPM----SkERRWLGTFDTAEEAACAYDCAARAMRGH 116 59*******.**********84....35999***********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.8E-29 | 66 | 122 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-33 | 66 | 129 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.9E-11 | 66 | 116 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-21 | 66 | 123 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.08E-30 | 66 | 122 | No hit | No description |
PROSITE profile | PS51032 | 21.918 | 66 | 123 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-9 | 67 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-9 | 89 | 105 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009880 | Biological Process | embryonic pattern specification | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0051726 | Biological Process | regulation of cell cycle | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MIKLPSGQTM DEVIMRLEGA EHRETNNHSL KRKPSRTSST APCSPGGVTT VKSVPGAGAS 60 GGTTIRYRGV RRRPWGRYAA EIRDPMSKER RWLGTFDTAE EAACAYDCAA RAMRGHKART 120 NFVYPIPSLD SYHHRIFSSP PMNMFLRHDV LNSQSLSPFA YPLSNVSGPV YDSFANVNDV 180 SEDHSPNHSP KAKRFSFFDN ESMISILEPE PAGSGLLQEI VQGFLPKPIP QQAATPPTTI 240 GVFPTMVETG FQSELRLPDH VNVEGNGFGQ LKYHGELGWV DHEGGFDSAK MHQNGNAGML 300 YQYCFHDY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-19 | 56 | 122 | 7 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First observed in the embryo at globular stage in cotyledons primordia and later confined to cotyledons tips and shoot apical meristem. Also detected in emerging leaf primordia. {ECO:0000269|PubMed:17056621, ECO:0000269|PubMed:17376809}. | |||||
Uniprot | TISSUE SPECIFICITY: Cotyledons, leaf primordia and shoot apical meristems. {ECO:0000269|PubMed:17056621, ECO:0000269|PubMed:17376809}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for correct embryo patterning and cotyledon organogenesis. May regulate positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Involved in the cytokinin signaling pathway that promotes shoot regeneration, probably through transcriptional activation of target genes such as CUC1. Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16339853, ECO:0000269|PubMed:17056621, ECO:0000269|PubMed:17376809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013597406.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013597406.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ESR2-like | ||||
Swissprot | Q9FYK5 | 1e-164 | ESR2_ARATH; Ethylene-responsive transcription factor ESR2 | ||||
TrEMBL | A0A0D3D6K5 | 0.0 | A0A0D3D6K5_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g050300.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7355 | 25 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24590.1 | 1e-131 | DORNROSCHEN-like |