PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013597387.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 1574aa    MW: 176712 Da    PI: 8.7137
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013597387.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.48.5e-16182283298
                     EEE-..-HHHHTT-EE--.HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   2 fkvltpsdvlksgrlvlp.kkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     +  lt+ dv++ +rl +  +k a ++            ++  l++ede+g++W + ++y + s+ y +t+GW+++v++++Lk+gDfv F++d+++
  XP_013597387.1 182 EICLTTIDVSNVDRLAVKaNKDAGKYfllatvvA---GTDSRLRFEDEEGKTWLFGFSYLNVSQCYEFTQGWSSYVEEKQLKAGDFVSFQRDRKD 273
                     5566777777777775531444556677774432...445579***********************************************99887 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     + +l+++ ++
  XP_013597387.1 274 SSKLFIGCRK 283
                     7778877765 PP
2zf-CCCH22.42.2e-0715191541426
                      ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH    4 elCrffartGtCkyGdrCkFaHg 26  
                      +lCr + rtG C  G++C+F H+
  XP_013597387.1 1519 SLCRSYVRTGNCAVGPSCSFDHP 1541
                      69********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.0E-20178286IPR015300DNA-binding pseudobarrel domain
CDDcd100173.08E-10180274No hitNo description
SMARTSM010193.5E-7181284IPR003340B3 DNA binding domain
SuperFamilySSF1019361.1E-12181284IPR015300DNA-binding pseudobarrel domain
PfamPF023625.3E-13182283IPR003340B3 DNA binding domain
PROSITE profilePS5086310.983221285IPR003340B3 DNA binding domain
SMARTSM002551.5E-6326463IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PfamPF015822.0E-19332490IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF522003.92E-13332466IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PROSITE profilePS5010410.308374463IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF525404.27E-39481746IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009312.1E-19503752IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3006.6E-7510653IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003645.6E-21520535No hitNo description
PRINTSPR003645.6E-21596610No hitNo description
PRINTSPR003645.6E-21687701No hitNo description
SuperFamilySSF467852.99E-5723827IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF520583.63E-338491090IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.109.8E-288501090IPR032675Leucine-rich repeat domain, L domain-like
PfamPF077251.8E-8910929IPR011713Leucine-rich repeat 3
PRINTSPR003645.6E-219991015No hitNo description
SuperFamilySSF520587.82E-1910241103IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520587.82E-1911581259IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.7E-1211601258IPR032675Leucine-rich repeat domain, L domain-like
PROSITE profilePS5010311.44115151543IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-515191541IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-415191540IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0043531Molecular FunctionADP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1574 aa     Download sequence    Send to blast
MDRLRALRRQ GLRDFEPSLP PRFMDRILDR MKKSLNRSGI SRRRLERCSS SFAEDLSVST  60
SSFATRSLEL PDRTSFRLLA AGGDGELDRI YKSLGVSGPD DLAISFDAWE ASKMRSSSGI  120
VNRFQPQADV LSSGVDSLDR DNTGGVGRFF KEHASEKASE KERGEMNLNP NYHDDVREDL  180
FEICLTTIDV SNVDRLAVKA NKDAGKYFLL ATVVAGTDSR LRFEDEEGKT WLFGFSYLNV  240
SQCYEFTQGW SSYVEEKQLK AGDFVSFQRD RKDSSKLFIG CRKSDESFPN PTSPGASIKT  300
VEMREKLKGV ETPFQPKLSE HSVTGSDPVL VIYCGDKQVS EEIYLISYIF NELCRCGFSP  360
LRYDMKKGTV TENQKLLHIS RVGIIIFSMN FAHSRECLDG FVAVMDHLKA NDLVLIPVFF  420
KVSVSAVRGQ LGSFGRAFIR LRNSVKASEV LKWRAAMIEL TSISGYAYKK GDEVILAKNI  480
VRAVCLPLSS ETNMKLRGTR LSLESILSLL NRSQPSSPQI VGLWGMAGIG KTTITREFFR  540
TQAERYDVCY FLPDFHLMCQ TKGLSYLRDD FFSKIFGAEK VFVDACDTKL RFTRDRFLGK  600
KVLIVLDGVS SAKDAEVLVG GFGWFSGGHT IILTSRNRQV LVQCNAKVIY EIEKLSKLES  660
LHLCCKFASK ENCKGRMSLT SELVDYASGN PLALRVLGLS IQNQSMKDQK QHLRRLRQHP  720
PVKILDAFKI SFNGRDGDEK SIFLDLACFF RGEDRDRVVK ILDGCGFSTD LGIYGLIDES  780
LISLLDNKIE MPNIFQDAGR FVVCQEHEEP GNRSRLWDSS DIAGVLKNNT GTEAVEGIFL  840
DASGLTFDLI STAFERMYRL RLLKIHCPTS VNHCKVCLPE GLHSLPDELR LLHWEKYPLG  900
SLPRNFNPKN LVELNMPYSN LTKVWKGTKN LEKLKRIILS HSQQLTKFPR LSKARNLEHI  960
DLEGCTSLVK VNSSILHHHK LTFLSLRNCS RLRVMPTTVH LKSLEVLNLS GCSELENLQD  1020
FSLNLKELYL AGAAIRELPS SIGDLTRLVT LDLENCESLQ HLPPGISNLK AMMTLKLSGC  1080
SNLKSLPVLD ALFLQDSQRS NTRITMEESV SINLHSAIQE SSREALEEFL PAFECLSNNG  1140
IPQESWTWVT VIPFPSPILH SLASRLYALV SLFLCNAYLV DIPEDICWLA SVMRLDLGGN  1200
SFSQIPKSIK EFRKLLSLNL RHCKNLKSLP ELPRSLVTLN AHGCVSLKSF PTSFEQFPRH  1260
FTFSNCFNLS PKVVRKYIGK ALDSVKGMAK RILQASLEQE HINAPAFSIC IPASAGHQSS  1320
FNFQAGSVVR RQLTPGMLKT LSGFALSVVV EFWDNYSNNA GFGIKCICRK TRTDLSPRLE  1380
RIFHCWAPKE PITVQRDHMF VFGSVKMHHA EAVNHDFLSD SVTFEFHPVN SENQLLGDSC  1440
TVKRCGVYLI TDATGNTTLS AKRPSSSMDS GGLSSMEHVA PPYKRCRLKG VIEIVILSLR  1500
KRKREMSVPT VKSFSKVKSL CRSYVRTGNC AVGPSCSFDH PTWVFTEKPK RLSASKSNQA  1560
TSGKDAIDTE QEEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-1817829411127DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
114401444TVKRC
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013597387.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013597384.10.0PREDICTED: disease resistance protein RRS1-like isoform X1
RefseqXP_013597387.10.0PREDICTED: disease resistance protein RRS1-like isoform X1
TrEMBLA0A0D3A4E00.0A0A0D3A4E0_BRAOL; Uncharacterized protein
STRINGBo1g021600.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45260.11e-163Disease resistance protein (TIR-NBS-LRR class)