PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013597384.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 1574aa MW: 176712 Da PI: 8.7137 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.4 | 8.5e-16 | 182 | 283 | 2 | 98 |
EEE-..-HHHHTT-EE--.HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 2 fkvltpsdvlksgrlvlp.kkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 + lt+ dv++ +rl + +k a ++ ++ l++ede+g++W + ++y + s+ y +t+GW+++v++++Lk+gDfv F++d+++ XP_013597384.1 182 EICLTTIDVSNVDRLAVKaNKDAGKYfllatvvA---GTDSRLRFEDEEGKTWLFGFSYLNVSQCYEFTQGWSSYVEEKQLKAGDFVSFQRDRKD 273 5566777777777775531444556677774432...445579***********************************************99887 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 + +l+++ ++ XP_013597384.1 274 SSKLFIGCRK 283 7778877765 PP | |||||||
2 | zf-CCCH | 22.4 | 2.2e-07 | 1519 | 1541 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +lCr + rtG C G++C+F H+ XP_013597384.1 1519 SLCRSYVRTGNCAVGPSCSFDHP 1541 69********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.0E-20 | 178 | 286 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.08E-10 | 180 | 274 | No hit | No description |
SMART | SM01019 | 3.5E-7 | 181 | 284 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.1E-12 | 181 | 284 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 5.3E-13 | 182 | 283 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.983 | 221 | 285 | IPR003340 | B3 DNA binding domain |
SMART | SM00255 | 1.5E-6 | 326 | 463 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
Pfam | PF01582 | 2.0E-19 | 332 | 490 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
SuperFamily | SSF52200 | 3.92E-13 | 332 | 466 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
PROSITE profile | PS50104 | 10.308 | 374 | 463 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
SuperFamily | SSF52540 | 4.27E-39 | 481 | 746 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Pfam | PF00931 | 2.1E-19 | 503 | 752 | IPR002182 | NB-ARC |
Gene3D | G3DSA:3.40.50.300 | 6.6E-7 | 510 | 653 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PRINTS | PR00364 | 5.6E-21 | 520 | 535 | No hit | No description |
PRINTS | PR00364 | 5.6E-21 | 596 | 610 | No hit | No description |
PRINTS | PR00364 | 5.6E-21 | 687 | 701 | No hit | No description |
SuperFamily | SSF46785 | 2.99E-5 | 723 | 827 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF52058 | 3.63E-33 | 849 | 1090 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 9.8E-28 | 850 | 1090 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Pfam | PF07725 | 1.8E-8 | 910 | 929 | IPR011713 | Leucine-rich repeat 3 |
PRINTS | PR00364 | 5.6E-21 | 999 | 1015 | No hit | No description |
SuperFamily | SSF52058 | 7.82E-19 | 1024 | 1103 | IPR032675 | Leucine-rich repeat domain, L domain-like |
SuperFamily | SSF52058 | 7.82E-19 | 1158 | 1259 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 1.7E-12 | 1160 | 1258 | IPR032675 | Leucine-rich repeat domain, L domain-like |
PROSITE profile | PS50103 | 11.441 | 1515 | 1543 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.2E-5 | 1519 | 1541 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.6E-4 | 1519 | 1540 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043531 | Molecular Function | ADP binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1574 aa Download sequence Send to blast |
MDRLRALRRQ GLRDFEPSLP PRFMDRILDR MKKSLNRSGI SRRRLERCSS SFAEDLSVST 60 SSFATRSLEL PDRTSFRLLA AGGDGELDRI YKSLGVSGPD DLAISFDAWE ASKMRSSSGI 120 VNRFQPQADV LSSGVDSLDR DNTGGVGRFF KEHASEKASE KERGEMNLNP NYHDDVREDL 180 FEICLTTIDV SNVDRLAVKA NKDAGKYFLL ATVVAGTDSR LRFEDEEGKT WLFGFSYLNV 240 SQCYEFTQGW SSYVEEKQLK AGDFVSFQRD RKDSSKLFIG CRKSDESFPN PTSPGASIKT 300 VEMREKLKGV ETPFQPKLSE HSVTGSDPVL VIYCGDKQVS EEIYLISYIF NELCRCGFSP 360 LRYDMKKGTV TENQKLLHIS RVGIIIFSMN FAHSRECLDG FVAVMDHLKA NDLVLIPVFF 420 KVSVSAVRGQ LGSFGRAFIR LRNSVKASEV LKWRAAMIEL TSISGYAYKK GDEVILAKNI 480 VRAVCLPLSS ETNMKLRGTR LSLESILSLL NRSQPSSPQI VGLWGMAGIG KTTITREFFR 540 TQAERYDVCY FLPDFHLMCQ TKGLSYLRDD FFSKIFGAEK VFVDACDTKL RFTRDRFLGK 600 KVLIVLDGVS SAKDAEVLVG GFGWFSGGHT IILTSRNRQV LVQCNAKVIY EIEKLSKLES 660 LHLCCKFASK ENCKGRMSLT SELVDYASGN PLALRVLGLS IQNQSMKDQK QHLRRLRQHP 720 PVKILDAFKI SFNGRDGDEK SIFLDLACFF RGEDRDRVVK ILDGCGFSTD LGIYGLIDES 780 LISLLDNKIE MPNIFQDAGR FVVCQEHEEP GNRSRLWDSS DIAGVLKNNT GTEAVEGIFL 840 DASGLTFDLI STAFERMYRL RLLKIHCPTS VNHCKVCLPE GLHSLPDELR LLHWEKYPLG 900 SLPRNFNPKN LVELNMPYSN LTKVWKGTKN LEKLKRIILS HSQQLTKFPR LSKARNLEHI 960 DLEGCTSLVK VNSSILHHHK LTFLSLRNCS RLRVMPTTVH LKSLEVLNLS GCSELENLQD 1020 FSLNLKELYL AGAAIRELPS SIGDLTRLVT LDLENCESLQ HLPPGISNLK AMMTLKLSGC 1080 SNLKSLPVLD ALFLQDSQRS NTRITMEESV SINLHSAIQE SSREALEEFL PAFECLSNNG 1140 IPQESWTWVT VIPFPSPILH SLASRLYALV SLFLCNAYLV DIPEDICWLA SVMRLDLGGN 1200 SFSQIPKSIK EFRKLLSLNL RHCKNLKSLP ELPRSLVTLN AHGCVSLKSF PTSFEQFPRH 1260 FTFSNCFNLS PKVVRKYIGK ALDSVKGMAK RILQASLEQE HINAPAFSIC IPASAGHQSS 1320 FNFQAGSVVR RQLTPGMLKT LSGFALSVVV EFWDNYSNNA GFGIKCICRK TRTDLSPRLE 1380 RIFHCWAPKE PITVQRDHMF VFGSVKMHHA EAVNHDFLSD SVTFEFHPVN SENQLLGDSC 1440 TVKRCGVYLI TDATGNTTLS AKRPSSSMDS GGLSSMEHVA PPYKRCRLKG VIEIVILSLR 1500 KRKREMSVPT VKSFSKVKSL CRSYVRTGNC AVGPSCSFDH PTWVFTEKPK RLSASKSNQA 1560 TSGKDAIDTE QEEE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 4e-18 | 178 | 294 | 11 | 127 | DNA-binding protein RAV1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 1440 | 1444 | TVKRC |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013597384.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013597384.1 | 0.0 | PREDICTED: disease resistance protein RRS1-like isoform X1 | ||||
Refseq | XP_013597387.1 | 0.0 | PREDICTED: disease resistance protein RRS1-like isoform X1 | ||||
TrEMBL | A0A0D3A4E0 | 0.0 | A0A0D3A4E0_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g021600.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5462 | 9 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45260.1 | 1e-163 | Disease resistance protein (TIR-NBS-LRR class) |