PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013597362.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GeBP

Protein Properties

Length: 403aa MW: 44149.4 Da PI: 4.7515

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013597362.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	118.6	3.3e-37	112	209	2	97
DUF573 2 lfqrlwseeDeivlLqGlidf.kaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 lfqrlw++eDei lL+G++d+ ++++g+s++ d+ fye++k++++++++k+qlveK+rrLKkK+++ ++k +sgke++f+++hdq +f++s+k XP_013597362.1 112 LFQRLWTDEDEIELLRGFLDYiTTHRGTSSHPpDTAPFYEQIKSKLQLEFNKNQLVEKLRRLKKKYRNVMSKFSSGKEVVFKSSHDQATFDISRK 206 79*****************99999999********************************************************** PP DUF573 95 iWg 97 iW+ XP_013597362.1 207 IWN 209 8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.6E-33	113	209	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MSPSDEREAV FSLESPELEE DGGAGGGGET DSDEEAVMPE PNDHEYEDLN SPLVTVTAKS 60 SSAATDTVTV ALPSGSAVPV SSIPADSDPK WHRTTEIVHL RPPPPLDDSR RLFQRLWTDE 120 DEIELLRGFL DYITTHRGTS SHPPDTAPFY EQIKSKLQLE FNKNQLVEKL RRLKKKYRNV 180 MSKFSSGKEV VFKSSHDQAT FDISRKIWNP TGKIIGFEDN NVMEFEETNG NNAHVEVDSE 240 NVLEKKVTMS SGSRKRPRSR IGKIDEDKAV SLSDGPVPSV NLNENVSAFG EFGDGRNLGG 300 LIEETVKSCV SPLIKEMMNG TTGMMMAAVG GFPGGGGAHA MGVLSPMLMP SVNPLGFGGG 360 GVGDERWRRQ QILELEVYSR RLELVQEQIR ATVNELKTMP SGG

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MSPSDEREAV FSLESPELEE DGGAGGGGET DSDEEAVMPE PNDHEYEDLN SPLVTVTAKS  60
SSAATDTVTV ALPSGSAVPV SSIPADSDPK WHRTTEIVHL RPPPPLDDSR RLFQRLWTDE  120
DEIELLRGFL DYITTHRGTS SHPPDTAPFY EQIKSKLQLE FNKNQLVEKL RRLKKKYRNV  180
MSKFSSGKEV VFKSSHDQAT FDISRKIWNP TGKIIGFEDN NVMEFEETNG NNAHVEVDSE  240
NVLEKKVTMS SGSRKRPRSR IGKIDEDKAV SLSDGPVPSV NLNENVSAFG EFGDGRNLGG  300
LIEETVKSCV SPLIKEMMNG TTGMMMAAVG GFPGGGGAHA MGVLSPMLMP SVNPLGFGGG  360
GVGDERWRRQ QILELEVYSR RLELVQEQIR ATVNELKTMP SGG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013597362.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013597362.1	0.0	PREDICTED: mediator-associated protein 1
Swissprot	F4K5T4	0.0	STKLU_ARATH; Probable transcription factor At5g28040
TrEMBL	A0A0D3DCD1	0.0	A0A0D3DCD1_BRAOL; Uncharacterized protein
STRING	Bo7g093330.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3098	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	1e-172	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes. Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586 [PMID:29264953]