PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013597302.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | LBD | ||||||||
Protein Properties | Length: 168aa MW: 18607 Da PI: 5.2397 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 84.6 | 1.4e-26 | 6 | 109 | 2 | 100 |
DUF260 2 CaaCkvlrrkCa....kdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 CaaC ++ C+ + Cv+apyfp+++p+kf v+k+FG+ nv k+l++l ++ +r+ a+++l+yeAear++dP++G +g + +++ l++lk XP_013597302.1 6 CAACEFMTGPCTlgngNACVMAPYFPSTEPEKFDRVNKVFGVVNVYKILSRLeEPWQRQYAVNALCYEAEARIHDPIHGYLGPQMVYNNILNNLK 100 ***********8555467**********************************55667************************************** PP DUF260 92 aelallkee 100 e++++k+e XP_013597302.1 101 REIDSAKNE 109 ***999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.05 | 4 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.3E-25 | 6 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MNFAICAACE FMTGPCTLGN GNACVMAPYF PSTEPEKFDR VNKVFGVVNV YKILSRLEEP 60 WQRQYAVNAL CYEAEARIHD PIHGYLGPQM VYNNILNNLK REIDSAKNEL SITMAKKNQL 120 MGLPDVDARR NVDEIVGMRE NDQGDVHRAD GASTSSGPSS GPPNQNQP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-26 | 4 | 110 | 10 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-26 | 4 | 110 | 10 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013597302.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013597302.1 | 1e-125 | PREDICTED: LOB domain-containing protein 35-like | ||||
TrEMBL | A0A0D3DFG3 | 1e-105 | A0A0D3DFG3_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g108110.1 | 1e-105 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4525 | 14 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35900.1 | 9e-30 | LOB domain-containing protein 35 |