PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013597275.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 326aa    MW: 36859 Da    PI: 9.6382
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013597275.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.12.4e-14117161347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ +++ + +++G+g+W++I+r++  +Rt+ q+ s+ qky
   XP_013597275.1 117 AWTPDEHSQFLIGLEKYGKGDWRSISRHLVVTRTPTQVASHAQKY 161
                      6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.112862IPR017884SANT domain
SMARTSM007173.5E-7961IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-41160IPR009057Homeodomain-like
SuperFamilySSF466892.66E-111167IPR009057Homeodomain-like
CDDcd001675.00E-71259No hitNo description
Gene3DG3DSA:1.10.10.603.6E-10108163IPR009057Homeodomain-like
PROSITE profilePS5129418.754109166IPR017930Myb domain
SuperFamilySSF466893.66E-16111167IPR009057Homeodomain-like
SMARTSM007173.8E-10114164IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.1E-15114164IPR006447Myb domain, plants
CDDcd001678.93E-10117162No hitNo description
PfamPF002495.6E-12117161IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MSIGEKTSGG SSWSRDDDIA FEKALAIYAD ETENRWEKIA GFVHGKTLEQ VLKRYEVLLR  60
DVMMIESSYV SLPEYDSSEG THAKDTNISE YGIINRTCEY TQECKPKPKQ RRRKGIAWTP  120
DEHSQFLIGL EKYGKGDWRS ISRHLVVTRT PTQVASHAQK YFSRLNSKNK NKTRQRIHDR  180
DVGSSNTSAM QSPNTWQNTQ ATSQPSQDHH PTYSTPTLWN TQATLQQSQD HPMYGTPTKW  240
NMQAASQPSV NIPIYGTHTV NQSMVGRMVS PFGSNMNRLA PPHIFYGVQH HSAPYSSVSR  300
APYSSVPSAP FNMAASYNMT YAPTSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-121085883RADIALIS
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013597275.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013597275.10.0PREDICTED: transcription factor DIVARICATA
RefseqXP_022561755.10.0transcription factor SRM1-like
TrEMBLA0A0D3DDA00.0A0A0D3DDA0_BRAOL; Uncharacterized protein
STRINGBo7g097510.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133911628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23650.11e-112Homeodomain-like transcriptional regulator