PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013597186.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 385aa    MW: 43479.4 Da    PI: 8.3181
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013597186.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.12.4e-16341141398
                     TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     +++l +pkkf + ++ k   +k +tl+++sg +++v l  +  +++   ++ GW +Fvk++ L e D +vFk++g+sef   v +f+
  XP_013597186.1  34 HNLLAIPKKFSTYCKRK--LPKIVTLKSPSGAKYNVGL--EEDDEKtLAFRCGWDKFVKDHSLHESDLLVFKFNGSSEF--EVLIFD 114
                     6889******9766755..8899***************..777766699***********************9998888..888876 PP
2B356.84e-18276373199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelv 93 
                     f+ v+++s+v +++ l++p +  +++++ +++  ++++ +    +W++k+++ +++gr   + GWk+Fv++n+L+egD++vF+ +  + + f+l 
  XP_013597186.1 276 FLVVMKRSHVVSKCFLYVPVQWSARNMSREPQ--DVVM-QVGETKWQLKFKHYGSKGRGGVSVGWKKFVRDNNLCEGDVCVFEPTkPEaKPFHLD 367
                     78899*********************988655..5665.557889999999888888888899********************663446888888 PP

                     EEEE-S CS
              B3  94 vkvfrk 99 
                     v +fr+
  XP_013597186.1 368 VYIFRA 373
                     888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.65E-2021115IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.50722116IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.7E-2023114IPR015300DNA-binding pseudobarrel domain
CDDcd100176.74E-1624114No hitNo description
SMARTSM010195.8E-1825116IPR003340B3 DNA binding domain
PfamPF023621.0E-1334114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-18274373IPR015300DNA-binding pseudobarrel domain
PfamPF023624.8E-16276373IPR003340B3 DNA binding domain
CDDcd100171.53E-20276372No hitNo description
SuperFamilySSF1019362.75E-18276373IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.8E-19276374IPR003340B3 DNA binding domain
PROSITE profilePS5086313.056276374IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MEENCEDCMR WEEQLYWNHF QTVHFSQLLL PGFHNLLAIP KKFSTYCKRK LPKIVTLKSP  60
SGAKYNVGLE EDDEKTLAFR CGWDKFVKDH SLHESDLLVF KFNGSSEFEV LIFDGDTLCE  120
KPTSYFVRKC GHAEKTSRAT DFTATSSRSP KRHINIPDDV ETTVNQQGPV KVSPVGNELD  180
DLIDIDTMLP QTGIEQEEHS NSDIDTDSGQ LPVISPTSKG PISEGKYPIG VFKKMRGQIS  240
INDLNRKAGG SRKRVGETNK KKALSLAKRA VSTKGFLVVM KRSHVVSKCF LYVPVQWSAR  300
NMSREPQDVV MQVGETKWQL KFKHYGSKGR GGVSVGWKKF VRDNNLCEGD VCVFEPTKPE  360
AKPFHLDVYI FRAAEAESSN NTTSE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013597186.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013597186.10.0PREDICTED: B3 domain-containing protein REM16
SwissprotQ8RYD11e-166REM16_ARATH; B3 domain-containing protein REM16
TrEMBLA0A3N6R8640.0A0A3N6R864_BRACR; Uncharacterized protein
STRINGBra037010.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104282335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-168B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]