PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013597183.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WOX

Protein Properties

Length: 195aa MW: 21755.3 Da PI: 5.9377

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013597183.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.4	6e-19	77	137	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ +e+ + +p+ +++ee++ +l ++ +++V++WFqNrRa+ k+ XP_013597183.1 77 RHRWTPTSMQLQILESIYEEgSGTPKPQRIEEITLELsqhgQVMDKNVYNWFQNRRARSKR 137 89***************99************************************97 PP
2	Wus_type_Homeobox	102	4.3e-33	76	139	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPt+ Q++iLe++y++G tP+ ++i++it eL+++G+++dkNV++WFQNr+aR+++kq XP_013597183.1 76 HRHRWTPTSMQLQILESIYEEGSGTPKPQRIEEITLELSQHGQVMDKNVYNWFQNRRARSKRKQ 139 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.14E-16	70	144	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.6E-15	71	145	IPR009057	Homeodomain-like
PROSITE profile	PS50071	13.135	73	138	IPR001356	Homeobox domain
SMART	SM00389	7.8E-12	75	142	IPR001356	Homeobox domain
CDD	cd00086	3.81E-12	77	139	No hit	No description
Pfam	PF00046	7.5E-17	77	137	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MDGGSQNGAY DGRVMTEEQM EILSKQIAIY AAICRQLVSL HESLSSKLPL SSGVDPTGGG 60 YFDSMGASPS TYKISHRHRW TPTSMQLQIL ESIYEEGSGT PKPQRIEEIT LELSQHGQVM 120 DKNVYNWFQN RRARSKRKQP QAMTTTTVQT VDAVAATEER SYGDSGGFVS YDHILFPSTD 180 FGIEHLLDGG IFRER

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	138	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013597183.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013597183.1	1e-145	PREDICTED: WUSCHEL-related homeobox 14-like
Swissprot	Q9LM84	1e-92	WOX14_ARATH; WUSCHEL-related homeobox 14
TrEMBL	A0A0D3D7S3	1e-144	A0A0D3D7S3_BRAOL; Uncharacterized protein
STRING	Bo7g061410.1	1e-144	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12211	17	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20700.1	6e-93	WUSCHEL related homeobox 14

Publications ? help Back to Top
Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997]