PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013597141.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 306aa    MW: 35236.8 Da    PI: 9.274
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013597141.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.62.5e-06243265123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+Cp+C+ +F+++  +  H+++H
  XP_013597141.1 243 YTCPKCNSVFNTSQKFAAHMSSH 265
                     9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.17E-5231267No hitNo description
Gene3DG3DSA:3.30.160.602.4E-4241268IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.002243265IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.034243270IPR007087Zinc finger, C2H2
PROSITE patternPS000280245265IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MSSNPNIFSS YGDDTTNYHG FVPNFRNHNS KTTRSMFTTS DHMNHRGLFS SSPSFSCYQN  60
SHVSSSSFGL NNSHMNYHMN SESDSVLGAN CFPITNNPQY SQVSFTQTIT NRFSAIVPSN  120
QIYNIQNDIA RVQHDMDFKT NMWNRPTSYR PTFLDKNCGI LNPKPVNAIP HQDSPYRQHL  180
DMFSSSSKYN HDLHVLQEGQ SSRKSPKPIK SHDNYNSDED GRSYDVQYDG RTHSLPYEKY  240
GPYTCPKCNS VFNTSQKFAA HMSSHYKDET KKERDERYRA RIKNKYHKLS SNIHGGSKKI  300
KLEAME
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013597141.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013597141.10.0PREDICTED: uncharacterized protein LOC106305307
TrEMBLA0A3P6EC890.0A0A3P6EC89_BRAOL; Uncharacterized protein
STRINGBo7g010020.11e-120(Brassica oleracea)
STRINGA0A087HDL41e-119(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19241958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42640.11e-102C2H2 family protein